Query= MSMg01no133_e05.b1 MSMg01no133_e05.b1 CHROMAT_FILE:
MSMg01no133_e05.b1 PHD_FILE: MSMg01no133_e05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:02 2005
(242 letters)
>mm_chr4_150800045_150800685
Length = 641
Score = 441 bits (228), Expect = e-128
Identities = 235/238 (98%), Gaps = 3/238 (1%)
Strand = Plus / Plus
Query: 5 gaattcctgaatgggtatcgaaggtatcactggcagggtaaagtgtagcagcctcaagtt 64
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctgaatgggtat-gaaggtatcactggcagggtaaagtgtagcagcctcaagtt 263
Query: 65 cagcaactaggtcaagtacacagtatcacggaggcctttagaaagaagctccttgattga 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cagcaactaggtcaagtacacagtatcacggaggcctttagaaagaagctccttgattga 323
Query: 125 aagagtccagtgacagtgtatgtgaatgccaatgaaattacccacaaaatacagtgtgtg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aagagtccagtgacagtgtatgtgaatgccaatgaaattacccacaaaatacagtgtgtg 383
Query: 185 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt--aagaaatgttctg 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 384 tgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaagaaatgttctg 441
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 73
Number of extensions: 24
Number of successful extensions: 24
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 641
Length adjustment: 9
Effective length of query: 233
Effective length of database: 632
Effective search space: 147256
Effective search space used: 147256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no133_e05.g1 MSMg01no133_e05.g1 CHROMAT_FILE:
MSMg01no133_e05.g1 PHD_FILE: MSMg01no133_e05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:02 2005
(578 letters)
>mm_chr4_150848624_150849605
Length = 982
Score = 998 bits (516), Expect = 0.0
Identities = 564/582 (96%), Gaps = 4/582 (0%)
Strand = Plus / Minus
Query: 1 tgtaagagaagcctccgtgatgggaagtgccctgtgacgggggacacggtggcactgggc 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct: 782 tgtaagagaagcctccctgatgggaagtgccctgtgacgggggacacggtggcgctcggc 723
Query: 61 tggagccgtaggtgacagtgttcagtcaggcgtgacatttatttacttgtccattcattc 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 722 tggagccgtaggtgacagtgttcagtcaggcgtgacatttatttacttgtccgttcattc 663
Query: 121 acccatttgttcgtttgcatgtctgatggacacccaagtgctccagcttgtgccacaaag 180
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 acccatttgttcatttgcatgtctgatggacacccaagtgctccagcttgtgccacaaag 603
Query: 181 agtgctgacacacaagggctcagagagcgacagagccctttggtcttgggaaagatattc 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 602 agtgctgacacacaagggctcagagagcgacagagccctttggtcttgggaaaggtattc 543
Query: 241 ttccagaacggagcaggctcgatcaggctcactgaccgcgcccttggttatgagacttga 300
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 542 ttccagaacggagcaggctcgatcaggctcactgaccgtgcccttggttatgagacttga 483
Query: 301 gcccttcctaaaaccttcccaggtagcgtgacataccataaagcaggttttggggacggg 360
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 482 gcccttcctaaaaccttcccaggtagcgtgacataccataaagcaggtcttggggacggg 423
Query: 361 ggcacagaccacaatgaagggcacagcctctgaattcatggatca----aggatccctct 416
|||| ||||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct: 422 ggcatggaccacagtgaagggcacagcctctgaattcatggatcaagtcaggatccctga 363
Query: 417 gccttgctgctcactggctgtggaatcagggccggagaccttgcattcgagtcattggaa 476
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcgttgctgctcactggctgtggaatcagggccggagaccttgcattcgagtcattggaa 303
Query: 477 tagtttggagataataaactcctggtccatcaagggagataaatccaggaagggaatggg 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tagtttggagataataaactcctggtccatcaagggagataaatccaggaagggaatggg 243
Query: 537 agagtctgacagaatagccagggagacctgtgacaatttggt 578
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 agagtctgacagaatagccagggagacctgtgacaatttggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 578
Length of database: 982
Length adjustment: 10
Effective length of query: 568
Effective length of database: 972
Effective search space: 552096
Effective search space used: 552096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
