BAC Information

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BAC

Clone NameMSMg01-133F18
Chromosome4 (Build37)
Map Location 8,825,728 - 8,948,597
singlet/doubletdoublet
Overlap geneLOC666782
Upstream geneCar8, LOC100039494, LOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7
Downstream geneLOC100039584, 4933402J24Rik, Asph, Gdf6, 4930448K20Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133F18.T7 (MSMg01no133_f18.b1)MSMg01-133F18.TJ (MSMg01no133_f18.g1)
ACCAG340361AG340362
length702716
length of high quality
(start - end)
309 (43 - 351)387 (69 - 455)
definitionCHROMAT_FILE: MSMg01no133_f18.b1 PHD_FILE: MSMg01no133_f18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:09 2005CHROMAT_FILE: MSMg01no133_f18.g1 PHD_FILE: MSMg01no133_f18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,825,728 - 8,826,033)(8,948,188 - 8,948,597)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAC
TCTCTGGAGAGGTAGTGGTTCCCATGTGCTTTGTAGAATGCCTCCTGCAT
TTAAGGACTTGTTTCCCCCCCAGTCCCTACTTGGAAGCGAAGCACTCTAG
CTAGTTCTGGGCTGAAGAAGCAGCAGCTTGCGCAGCTCTGAAGGGAAAGT
AGATGTGTTAGACTTTGAGCTCCAGGTGCCTTCTTTCTGATGGATTTTTA
GGGTAATTCTGAAACCATGTGACTTTGCTTTGAGTGCCTGATCTGTGAGG
ATCATGTTGGTGTTTATGATGATATATCACCTGACATTTTCTTCTTATTG
TANATAAATGCCCCCCCCCCCCCCCTATAATATTCTTTGATTGCGGTTTC
CCCTCCCCCAACTTCTCAAAAATATTCCCCACCTTCGGCGGTCCATTCTC
TCTCTTTTTAAAACACAAACAAATCACAAACCAGCATTAACAAATCACCC
ACACACAGAAAGCTAAAACTTACATGCAGATGACAAATATGACCCCCCCC
TCCCCCTGCCTAAATGACAAATAAAACAAAATGAGACCAATAGTTTACCG
AAGTACCACCGAATTACCTTTGTGTCTCGGCCTCTATCTAGTCTGGCTTA
CCTACCCCACAAGATTCCACTGTAGAAAAGTAATTTTTTCTTTGGTACCA
TA
CATGAAGTGAGAGGCCTGGCGGACGCCTGGTTTCATATAAGGGGTGACCT
ATAGAAGGATTTCCGAAATTCCCTATTGTCCTGCTTCCGCCTTCCTCACA
GTCAATATTTAATAAATTACTCTCTGTGATTTTTTTTTCCTGCATCTTCC
CTTTAGAGACAAAAAAAAAAATCCTCTCATCTTTGGAAAGTTCTCAATAT
CAAGAACCAGACCTTGAACACAGCAGAGACTTAATGCAGGTGTCCCTCCA
TTTTTGAAGTCAGTTTCTAATTCATAGACTGGAGGGTTAGCTAAAGCCCT
AACAAGACTCATTTGACAGGTAGCCCCATCATGAATTGATAATACTGTAC
GTGGGGAAAGGACTGAATTTGTGTAACCTACTGCCCATCACAGCTTGGCC
ATACAGTGTGAGCTGCAGCTCTCTGCCTCTGTCCATCTTCACAGGAGAGT
CTCAGACTGAAGAGCAATAATCTTGGTAAAAAAACAAACAAACAAAAATC
AAAGTGCAGTTCCTACTAAATGTGCATTGCTGATCCTTTTTAAGGGTATA
TAATCATGCCAAGAATGTGATAAGACTAAATGGGATTGTCTGTCTGTCTG
TCTGCCTGTCCGTCTGTGACATGCTCATAAAGAGCCTCGATTATGTTGCT
GCAGCGATGGTTCATTGTCTATGAAAGTGCTACTGAATTTGGCTCCCCGA
TCCCATCTTAAGGAGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_f18.b1 MSMg01no133_f18.b1 CHROMAT_FILE:
MSMg01no133_f18.b1 PHD_FILE: MSMg01no133_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:09 2005
         (309 letters)



>mm_chr4_8825525_8826233
          Length = 709

 Score =  538 bits (278), Expect = e-157
 Identities = 299/306 (97%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaactctctggagaggtagtggttcccatgtgctttgtagaatgcctcctgcatttaag 63
           |||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 204 ggaattctctggagaggtagtggttcccatgtgccttgtaaaatgcctcctgcatttaag 263

                                                                       
Query: 64  gacttgtttcccccccagtccctacttggaagcgaagcactctagctagttctgggctga 123
           |||||| ||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacttgcttctccacaagtccctacttggaagcgaagcactctagctagttctgggctga 323

                                                                       
Query: 124 agaagcagcagcttgcgcagctctgaagggaaagtagatgtgttagactttgagctccag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaagcagcagcttgcgcagctctgaagggaaagtagatgtgttagactttgagctccag 383

                                                                       
Query: 184 gtgccttctttctgatggatttttagggtaattctgaaaccatgtgactttgctttgagt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgccttctttctgatggatttttagggtaattctgaaaccatgtgactttgctttgagt 443

                                                                       
Query: 244 gcctgatctgtgaggatcatgttggtgtttatgatgatatatcacctgacattttcttct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcctgatctgtgaggatcatgttggtgtttatgatgatatatcacctgacattttcttct 503

                 
Query: 304 tattgt 309
           ||||||
Sbjct: 504 tattgt 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no133_f18.g1 MSMg01no133_f18.g1 CHROMAT_FILE:
MSMg01no133_f18.g1 PHD_FILE: MSMg01no133_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:09 2005
         (387 letters)



>mm_chr4_8947886_8948672
          Length = 787

 Score =  663 bits (343), Expect = 0.0
 Identities = 383/411 (93%), Gaps = 25/411 (6%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttccctattgtcctgcttccgccttcctcacagtcaatatttaataaattactctc-tgt 59
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 712 ttccctattgtcctgcttccgccttcctcacagtcaatatttaataaattact-tcatgt 654

                                                                       
Query: 60  gatttttttttcctgcatcttccctttagagacaaaaaaaaaa----------------- 102
           |||||||||||||||||||||||||| ||||||||||||||||                 
Sbjct: 653 gatttttttttcctgcatcttcccttcagagacaaaaaaaaaaaaaaaaaaaaaaaaaaa 594

                                                                       
Query: 103 ------atcctctcatctttggaaagttctcaatatcaagaaccagaccttgaacacagc 156
                 ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aaacccatcctctcatctttggaaagttctcaatatcaagaaccagaccttgaacacagc 534

                                                                       
Query: 157 agagacttaatgcaggtgtccctccatttttgaagtcagtttctaattcatagactggag 216
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agagacttaatgcaggtgtccctccatttttgaagtcagtttctaattcatagactggag 474

                                                                       
Query: 217 ggttagctaaagccctaacaagactcatttgacaggtagccccatcatgaattgataata 276
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 473 ggttagctaaagccctaacaagactcatttgacaggcagccccatcatgaattgataata 414

                                                                       
Query: 277 ctgtacgtggggaaaggactgaatttgtgtaacctactgcccatcacagcttggccatac 336
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctgtacgtggggaaaggactgaatttgtgtaacctactgcccatcacagcttggccatac 354

                                                              
Query: 337 agtgtgagctgcagctctctgcctctgtccatcttcacaggagagtctcag 387
           ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agtgtgagctgtagctctctgcctctgtccatcttcacaggagagtctcag 303


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)