Query= MSMg01no133_f18.b1 MSMg01no133_f18.b1 CHROMAT_FILE:
MSMg01no133_f18.b1 PHD_FILE: MSMg01no133_f18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:09 2005
(309 letters)
>mm_chr4_8825525_8826233
Length = 709
Score = 538 bits (278), Expect = e-157
Identities = 299/306 (97%)
Strand = Plus / Plus
Query: 4 ggaactctctggagaggtagtggttcccatgtgctttgtagaatgcctcctgcatttaag 63
|||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct: 204 ggaattctctggagaggtagtggttcccatgtgccttgtaaaatgcctcctgcatttaag 263
Query: 64 gacttgtttcccccccagtccctacttggaagcgaagcactctagctagttctgggctga 123
|||||| ||| || | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gacttgcttctccacaagtccctacttggaagcgaagcactctagctagttctgggctga 323
Query: 124 agaagcagcagcttgcgcagctctgaagggaaagtagatgtgttagactttgagctccag 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 agaagcagcagcttgcgcagctctgaagggaaagtagatgtgttagactttgagctccag 383
Query: 184 gtgccttctttctgatggatttttagggtaattctgaaaccatgtgactttgctttgagt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gtgccttctttctgatggatttttagggtaattctgaaaccatgtgactttgctttgagt 443
Query: 244 gcctgatctgtgaggatcatgttggtgtttatgatgatatatcacctgacattttcttct 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gcctgatctgtgaggatcatgttggtgtttatgatgatatatcacctgacattttcttct 503
Query: 304 tattgt 309
||||||
Sbjct: 504 tattgt 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space: 210000
Effective search space used: 210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_f18.g1 MSMg01no133_f18.g1 CHROMAT_FILE:
MSMg01no133_f18.g1 PHD_FILE: MSMg01no133_f18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:09 2005
(387 letters)
>mm_chr4_8947886_8948672
Length = 787
Score = 663 bits (343), Expect = 0.0
Identities = 383/411 (93%), Gaps = 25/411 (6%)
Strand = Plus / Minus
Query: 1 ttccctattgtcctgcttccgccttcctcacagtcaatatttaataaattactctc-tgt 59
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct: 712 ttccctattgtcctgcttccgccttcctcacagtcaatatttaataaattact-tcatgt 654
Query: 60 gatttttttttcctgcatcttccctttagagacaaaaaaaaaa----------------- 102
|||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 653 gatttttttttcctgcatcttcccttcagagacaaaaaaaaaaaaaaaaaaaaaaaaaaa 594
Query: 103 ------atcctctcatctttggaaagttctcaatatcaagaaccagaccttgaacacagc 156
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 aaacccatcctctcatctttggaaagttctcaatatcaagaaccagaccttgaacacagc 534
Query: 157 agagacttaatgcaggtgtccctccatttttgaagtcagtttctaattcatagactggag 216
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 agagacttaatgcaggtgtccctccatttttgaagtcagtttctaattcatagactggag 474
Query: 217 ggttagctaaagccctaacaagactcatttgacaggtagccccatcatgaattgataata 276
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 473 ggttagctaaagccctaacaagactcatttgacaggcagccccatcatgaattgataata 414
Query: 277 ctgtacgtggggaaaggactgaatttgtgtaacctactgcccatcacagcttggccatac 336
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 ctgtacgtggggaaaggactgaatttgtgtaacctactgcccatcacagcttggccatac 354
Query: 337 agtgtgagctgcagctctctgcctctgtccatcttcacaggagagtctcag 387
||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 353 agtgtgagctgtagctctctgcctctgtccatcttcacaggagagtctcag 303
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space: 294084
Effective search space used: 294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|