Query= MSMg01no133_j05.b1 MSMg01no133_j05.b1 CHROMAT_FILE:
MSMg01no133_j05.b1 PHD_FILE: MSMg01no133_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:25 2005
(637 letters)
>mm_chr4_71165465_71166501
Length = 1037
Score = 1210 bits (626), Expect = 0.0
Identities = 634/637 (99%)
Strand = Plus / Plus
Query: 1 cgttaaatccagataaggccccaattaagtcaaatggtaaacaagaaataatgtggtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cgttaaatccagataaggccccaattaagtcaaatggtaaacaagaaataatgtggtttg 260
Query: 61 tccttactttctagattattgtaaagttcatattatccagtctgcagaaggactgaactt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tccttactttctagattattgtaaagttcatattatccagtctgcagaaggactgaactt 320
Query: 121 tcaaagtttaagatgataatttcatcatcagatttgtttcaagaccttgatttagtcatg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcaaagtttaagatgataatttcatcatcagatttgtttcaagaccttgatttagtcatg 380
Query: 181 taaaaatgccagaaatatatgtttgggcatgtagtctgagggttctagaccaaaagggcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 taaaaatgccagaaatatatgtttgggcatgtagtctgagggttctagaccaaaagggcc 440
Query: 241 ctatatagatgggttagggcagggtacatcttgtgatacaggttatcatttcttggcaac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctatatagatgggttagggcagggtacatcttgtgatacaggttatcatttcttggcaac 500
Query: 301 agcagaaagtaacctctctaaaatacagttaccatggagacaatattgtgctatgatcta 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 agcagaaagtaacctctctaaaatacagttaccatggagacaatattgtgctatcatcta 560
Query: 361 attactcccccattttaagttgtgtaaaactagctttcatcttgttccatgtccttggtg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attactcccccattttaagttgtgtaaaactagctttcatcttgttccatgtccttggtg 620
Query: 421 actacactttgaaaaacagaaattggctgcattttgagagcaaatgtgcatcaatatcac 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actacactttgaaaaacagaaattggctgcattttgagagcaaatgtgcatcaatatcac 680
Query: 481 cacctaggtagcacttcaatggaggtacagattgataaataacttaagcatgtaagccaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cacctaggtagcacttcaatggaggtacagattgataaataacttaagcatgtaagccaa 740
Query: 541 aaggcactgcatatatattcattgaaatagaatggggaaacatgggatttttggctgcat 600
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 741 aaggcactgcatatatattcattgaaatagagtggggaaacatgggatttttggctgcat 800
Query: 601 tanaactgtatcagaaaaatcaggcccaagaacatat 637
|| ||||||||||||||||||||||||||||||||||
Sbjct: 801 taaaactgtatcagaaaaatcaggcccaagaacatat 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 637
Length of database: 1037
Length adjustment: 10
Effective length of query: 627
Effective length of database: 1027
Effective search space: 643929
Effective search space used: 643929
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no133_j05.g1 MSMg01no133_j05.g1 CHROMAT_FILE:
MSMg01no133_j05.g1 PHD_FILE: MSMg01no133_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:25 2005
(639 letters)
>mm_chr4_71318249_71319287
Length = 1039
Score = 1180 bits (610), Expect = 0.0
Identities = 631/638 (98%)
Strand = Plus / Minus
Query: 1 aattcttgttgtgattattctcgacaaccttgtgagaagcagctgggtatcacctggtat 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 1018 aattcttgttgtgattattctcgacaaccttgtgagaagcagctggggatcagctggtat 959
Query: 61 aatttcaaattagagtgtaataactttcagatgtgaaatataatcaccatggtaaccaga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 958 aatttcaaattagagtgtaataactttcagatgtgaaatataatcaccatggtaaccaga 899
Query: 121 aagaaaatagttacagactacagaataaaagaaaatgggaagataattcagcattttatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 898 aagaaaatagttacagactacagaataaaagaaaatgggaagataattcagcattttatt 839
Query: 181 gatataaacaagacaaagatttttatttaggtgatggagcctataacagtttttagtgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 838 gatataaacaagacaaagatttttatttaggtgatggagcctataacagtttttagtgtt 779
Query: 241 tgaacttgattttcctttaggcatggattattattacaaagaatgatttatatttttaaa 300
||||||||||||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct: 778 tgaacttgatttttctttaggcatggattatcattacaaagaatgatttatacttttaaa 719
Query: 301 ttttctctgtcataattcagctaatgaaatactcagcataaagagctagtttttagttct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 ttttctctgtcataattcagctaatgaaatactcagcataaagagctagtttttagttct 659
Query: 361 caaattttgagctatgtagtttgtctaaagtttagccataggccagcactcagtcaaatg 420
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 658 caagttttgagctatgtagtttgtctaaagtttagccataggccagcactcagtcaaatg 599
Query: 421 ttgggattttaagtataagcacactgatggatgtattcattatccatgttacctgtaaca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 ttgggattttaagtataagcacactgatggatgtattcattatccatgttacctgtaaca 539
Query: 481 attcacatcccagaatgctctgtttgacactcttaggaactttgtactttattcctcaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 attcacatcccagaatgctctgtttgacactcttaggaactttgtactttattcctcaga 479
Query: 541 atacggatttgaagagagtaatgctgccacaatggatctttaatttgcgttattcagcag 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 atacggatttgaagagagtaatgctgccacaatggatctttaatttgcgttattcagcag 419
Query: 601 ttgatataagtctatactagctattatactattatact 638
||||||| ||||||||||||||||||||||||||||||
Sbjct: 418 ttgatatgagtctatactagctattatactattatact 381
Score = 62.6 bits (32), Expect = 9e-14
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 195 aaagatttttatttaggtgatggagcctataacagt 230
|||||||||||||||||||||||||||||| |||||
Sbjct: 345 aaagatttttatttaggtgatggagcctattacagt 380
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 2
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space: 647241
Effective search space used: 647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
