BAC Information

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BAC

Clone NameMSMg01-133M08
Chromosome4 (Build37)
Map Location 57,692,840 - 57,693,367
singlet/doubletsinglet
Overlap genePalm2
Upstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, LOC100041513
Downstream geneAkap2, D630039A03Rik, Txn1, Txndc8, Svep1, Musk, Edg2, LOC675306, LOC433711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-133M08.T7 (MSMg01no133_m08.b1)MSMg01-133M08.TJ (MSMg01no133_m08.g1)
ACCAG340657AG340658
length680714
length of high quality
(start - end)
293 (74 - 366)530 (73 - 602)
definitionCHROMAT_FILE: MSMg01no133_m08.b1 PHD_FILE: MSMg01no133_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:40 2005CHROMAT_FILE: MSMg01no133_m08.g1 PHD_FILE: MSMg01no133_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:48:40 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGA
ATTCACTGTGGATCTCCAGCTAGCCTAGAACTCTGTCAATGGATCTATCT
CATCCTCCCTATGCTGAGACTCTTCCATACCTGTTGTGCCCCTCCCCAAA
AAATAAAGTTATTTCTTTGCTACTTCATAACTGAGATCTTGCTACTGTGA
TGAATTGTAAGTATCTGATATGCAGGCTATCTGTATGCAACCCCAAAGAG
ATTGTAACCCACAGGTTGAGAACTGCTGCCCCATATAGACCAGGCTAACC
TTGACTCACAGAGAACAGCCTGCCTCTGCCTCCCAAATCCTGAGATTAAA
GGTATATGCCACCATGCTCAGGCTTGAAGCTGATATTCTTGCAACTATTT
TATGGCTCATGAAAGTGAAGGTCAGAGAGATGATTATCTCTATCTTTTTA
ATCTAGTGTTTGCATGCTTATTATTTACCAGGACTAGGAAATGAATCTAC
GACCTCGTGGGTGGTAAGCAAGAGTCTCGCCACTGAACTCTGTATGTTCA
AGCCCTCTTTGTACTTTATTTTGAGATGAGGTTCCATGAAGTTGAGTTGC
CCAGGCTGGCCTCCAATTTATGATCTTCCTCCCTCGACCTCTTGAGCAGC
AGGGACTGTAGGATTTGCTCCACCAGTCCT
AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTGATCCTTCTGCCTCTGCTGCTGAATG
CTGGAATGACAGCCCACCACACTGGTTGTGGTTAGGTAAACTCTACTTCA
TGGTCCAGGAGGTAGAACCTCTGAAGGGTAGTCCTCAGGGAAGGCCAGGT
ACATTTTTTTTCCTCACTAGATGAATTTCATCCAGTGTAAGGGGAATGGG
ATTGAAGAAAATAGAAAAGCATACACAGGTAAAGTTCACAGCTGTCCTCG
ACCTTCGCTTCTGTTGCTATGCTCACTTCGGAGCCACATATCCTTCTGTG
TTCGACCTCCAGTGTACGACTGGAAGCTCTAAGCCACCAATGGCTTTTTC
TGTGAGGCCAACGTTTAAAGGCTCGTCCCCACGGAGTTCAGCTGACAAAG
GAACTCGAAGTCAGTGCCACAAAAAGATGCTTATAACCGTAGCCAGTTAA
GATCCCCTGCTGAGACTTTCACTGCAGTGAGAGTATGGGGCACAGGTCTA
GTCAAGCCTCAGTTACAAAGGTTGATTATCAGTAATGAATTAATAAACCT
TGCCCTTTAAAAAAAAAAAACAACCCTTTTGCTAGGTCATTATTATGGCT
CTAAGCTGTTACTAGCTTTCGCCCCAAATCTTGGAAAACGTCTAAGCGCT
CACCCCAAACTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no133_m08.g1 MSMg01no133_m08.g1 CHROMAT_FILE:
MSMg01no133_m08.g1 PHD_FILE: MSMg01no133_m08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:48:40 2005
         (530 letters)



>mm_chr4_57692640_57693567
          Length = 928

 Score =  934 bits (483), Expect = 0.0
 Identities = 518/531 (97%), Gaps = 4/531 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttgatccttctgcctctgctgctgaatgctggaatgacagcccaccacactggttgtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 ttgatccttctgcctctgctgctgaatgctggaatgacagcccaccacactggttttggt 260

                                                                       
Query: 61  taggtaaactctacttcatggtccaggaggtagaacctctgaagggtagtcctcagggaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taggtaaactctacttcatggtccaggaggtagaacctctgaagggtagtcctcagggaa 320

                                                                       
Query: 121 ggccaggtaca-ttttttttcctcactagatgaatttcatccagtgtaaggggaatggga 179
           | ||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 321 gcccaggtacatttttttttcctcactagatgaatttcatccagtgtaaggggaaaggga 380

                                                                       
Query: 180 ttgaagaaaatagaaaagcatacacaggtaaagttcacagctgtcctcgaccttcgcttc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttgaagaaaatagaaaagcatacacaggtaaagttcacagctgtcctcgaccttcgcttc 440

                                                                       
Query: 240 tgttgctatgctcacttcggagccacatatccttctgtgttcgacctccagtgtacgact 299
           ||||||||||||||   |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 tgttgctatgctca---cggagccacatatcgttctgtgttcgacctccagtgtacgact 497

                                                                       
Query: 300 ggaagctctaagccaccaatggctttttctgtgaggccaacgtttaaaggctcgtcccca 359
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 498 ggaagctctaagccaccaatggctttttctgtgaggccagcgtttaaaggctcgtcccca 557

                                                                       
Query: 360 cggagttcagctgacaaaggaactcgaagtcagtgccacaaaaagatgcttataaccgta 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 cggagttcagctgacaaaggaactcgaagtcagtgccacaaaaagatgcttataaccgta 617

                                                                       
Query: 420 gccagttaagatcccctgctgagactttcactgcagtgagagtatggggcacaggtctag 479
           |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 618 gccagttaaggtcccctgctgagactttcactgtagtgagagtatggggcacaggtctag 677

                                                              
Query: 480 tcaagcctcagttacaaaggttgattatcagtaatgaattaataaaccttg 530
           |||||||||||||||||||| |||||| |||||||||||||||||||||||
Sbjct: 678 tcaagcctcagttacaaaggatgattagcagtaatgaattaataaaccttg 728


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 530
Length of database: 928
Length adjustment: 10
Effective length of query: 520
Effective length of database: 918
Effective search space:   477360
Effective search space used:   477360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)