Query= MSMg01no134_a17.b1 MSMg01no134_a17.b1 CHROMAT_FILE:
MSMg01no134_a17.b1 PHD_FILE: MSMg01no134_a17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:04 2005
(729 letters)
>mm_chr4_85182252_85183380
Length = 1129
Score = 1280 bits (662), Expect = 0.0
Identities = 710/726 (97%)
Strand = Plus / Plus
Query: 4 aacataaaatggcttaaaccaggaaaaaccttagaaccctaaactgtcagacgtgagaac 63
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct: 204 aacataaaatggcttaaaccaggaaaaacaatagaaccctaaactgtcagatgtgagaac 263
Query: 64 aaggatgaggcaggggctcatgagttagagacctgtctgtgctatcgcaagatcttgtat 123
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 264 aaggatgaggcaggggctcatgagttagagacctgtctgtgctatcgaaagatcttgtat 323
Query: 124 caaacaacaggaaagaaaaattgaaaaatagaacaccctgtgtcagagaatgggaaaata 183
||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 caaacaacaggaaaggaaaagtgaaaaatagaacaccctgtgtcagagaatgggaatata 383
Query: 184 aaaaccttaggcagcaggagcgtccctgcttcctctgcaggccccgggggagagtctgtt 243
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 aaatccttaggcagcaggagcgtccctgcttcctctgcaggccccgggggagagtctgtt 443
Query: 244 ctttgtccctttcagtttctgctggcttccagcattccttagttgtccgactttgtggat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 ctttgtccctttcagtttctgctggcttccagcattccttagttgtccgactttgtggat 503
Query: 304 agttcatttcaactctgcctctgtcttatgcccttttctgtgtgtattggcccttttctg 363
|| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 504 agatcattccaactctgcctctgtcttttgcccttttctgtgtgtattggcccttttctg 563
Query: 364 actcttgttatacatatagaactccttcaaagaatcacacaatcctatgcctctgcgcac 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 564 actcttgttatacatatagaactccttcaaagaatcacacaatcctatgcctctgggcac 623
Query: 424 ccttggccacacctgagaaggtgaggtgtggccactgggagacctgttcagcctactgct 483
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 624 ccttggccacacctgagaaggtgaggtgtggccactgggagacctgttcagccttctgct 683
Query: 484 tcctgtgaggtttctggagaacttcctggctgctggtttatctccctcggcagtactttg 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tcctgtgaggtttctggagaacttcctggctgctggtttatctccctcggcagtactttg 743
Query: 544 cttcaaaggtgtgtggttctatttcacttcagggctgtctgcctctgttctttgttctct 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 cttcaaaggtgtgtggttctatttcacttcagggctgtctgcctctgttctttgttctct 803
Query: 604 tatctgtaatactgacctgatcgcttggatcttggcggtctgtgtcattgctagtgaatt 663
||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct: 804 tatctgtaatactgacctgatagcttggatcttggcagtctgtgtcattgctagtgaatt 863
Query: 664 ttatgtggtctgatgacaagacatcactgctgctcctcagcatctcactaaaggacaact 723
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 864 ttatgtggtctgatgacaagacatcactgctgctcctcggcatctcactaaaggacaact 923
Query: 724 cggtga 729
||||||
Sbjct: 924 cggtga 929
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 729
Length of database: 1129
Length adjustment: 10
Effective length of query: 719
Effective length of database: 1119
Effective search space: 804561
Effective search space used: 804561
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_a17.g1 MSMg01no134_a17.g1 CHROMAT_FILE:
MSMg01no134_a17.g1 PHD_FILE: MSMg01no134_a17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:04 2005
(827 letters)
>mm_chr4_85338105_85339331
Length = 1227
Score = 1500 bits (776), Expect = 0.0
Identities = 815/830 (98%), Gaps = 6/830 (0%)
Strand = Plus / Minus
Query: 1 ccccatatacacagaatggata--cc-cttatcagaacacataggtgatgtaggtagggt 57
|||||||||||||||||||||| || | |||||||||||||||||||||||||||||
Sbjct: 1027 ccccatatacacagaatggatagtccac---tcagaacacataggtgatgtaggtagggt 971
Query: 58 tagaaaaagaaaagaacaaaactaaccccacagaaagcaagtacattcctgtaggagttt 117
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 970 tagaaaaagaaaagaacaaaactaaccccacagaaagcaagtaaattcctgtaggagttt 911
Query: 118 gaaacaacaaataatttttcatcatcatgcatatttgactatcatatttgatagacaata 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 910 gaaacaacaaataatttttcatcatcatgcatatttgactatcatatttgatagacaata 851
Query: 178 atggtagctaatatccattttctttcatctcatctgtctaacttgtaaaatatgctctac 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 850 atggtagctaatatccattttctttcatctcatctgtctaacttgtaaaatatgctctac 791
Query: 238 aagaagtaatacccagtcaaatctaatgagtgatttcctctctcagagcattacagaatg 297
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 790 aagaagtaatacccagtcaaatctaatgagtggtttcctctctcagagcattacagaatg 731
Query: 298 catcagttcctcaacctataattctaccggagaccttctcatcttcccaactccccagca 357
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 730 catcagttcctcaacctagaattctaccggagaccttctcatcttcccaactccccagca 671
Query: 358 tgacttaaaactcttcccttctttcctttctcctttgatctgccttctgcacagtgacaa 417
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 tgacttaaaattcttcttttctttcctttctcctttgatctgccttctgcacagtgacaa 611
Query: 418 tcccacactcctctctaatgaactcgatccttatccagccaatctcttttttagccctcg 477
||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||
Sbjct: 610 tcccacactcctctctaatgagctcgatcctcatccagccaatctcttttttagccctcg 551
Query: 478 gtgcaagtgctatcttcctcaagatgacttacagggtgtgctcaagtgatttttcctcac 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 gtgcaagtgctatcttcctcaagatgacttacagggtgtgctcaagtgatttttcctcac 491
Query: 538 tgcaaactaattcatttgttttttcaaggccaaatctccgttctgcacaaagccttccga 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tgcaaactaattcatttgttttttcaaggccaaatctccgttctgcacaaagccttccga 431
Query: 598 ttctatcaccgggaatggctggaaacgttagtgaaatctagttctcagttcctaaagacg 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ttctatcaccgggaatggctggaaacgttagtgaaatctagttctcagttcctaaagacg 371
Query: 658 ttattagatcagtacagctgtattggtcactagaggactctaaataatgattatagtgat 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttattagatcagtacagctgtattggtcactagaggactctaaataatgattatagtgat 311
Query: 718 gaggagctaaaacatgggaaagtggtgacggatcaaatataaatctcataaacctaaaag 777
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gaggagctaaagcatgggaaagtggtgacggatcaaatataaatctcataaacctaaaag 251
Query: 778 agaagttgtaactaatcatgtttagagccatttttaatgctaccttctgc 827
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agaagttgtaactaatcatgtttagagccatttttaatgctaccttctgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 827
Length of database: 1227
Length adjustment: 10
Effective length of query: 817
Effective length of database: 1217
Effective search space: 994289
Effective search space used: 994289
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
