BAC Information

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BAC

Clone NameMSMg01-134B16
Chromosome4 (Build37)
Map Location 78,243,260 - 78,243,551
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134B16.T7 (MSMg01no134_b16.b1)MSMg01-134B16.TJ (MSMg01no134_b16.g1)
ACCAG340901AG340902
length1,1711,133
length of high quality
(start - end)
292 (500 - 791)199 (206 - 404)
definitionCHROMAT_FILE: MSMg01no134_b16.b1 PHD_FILE: MSMg01no134_b16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:11 2005CHROMAT_FILE: MSMg01no134_b16.g1 PHD_FILE: MSMg01no134_b16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NAAAATTTNNNNNGTGCATTGGGCGCTAAGACTCACTAAGGGAGAGGATC
CGCGGAATTCACACACTCCACAGGTGCGCTTCTGTCTTGATGATCAACAT
TAGTATGGGATTTTACCATAGGGCCATAGGAATTATGAATCTGGGGCTCT
TAGTTTTGGGCTGTGGATTTTTTAAACTAACCCTGTCTTTCCAAGAGTTT
CTATTTCCACTCACAAAATGTGGATTTTTCTTTTAAATGATACCTACCTT
AGTATTGTTGTCTTAAAGGAGACAGAGCCACAAAGACTCATAGTCCACTG
CCTTTGTCATACTAAGTGGCTAGATGTTGCTTAATTGAGAGAGGAACTAT
AAAGCCATGTCTATAAGTTTTTTCTTCAATTTTTTTCTACAAGATAACCA
TGGTTGCCCAAGGGAGAATCTACTCTTGCCAAACTACTGATTGCATGTTG
AATTTTTTTCCCCCCGCTAGGAGAAGATGACAACAGTATAAAAAGAAGGA
TTTGTGGTAAACATTGAAGTGACGGTTAAAACTTCACATATGTGTATTTA
GCGTTTTGGATGACATTAATGTCTTGTATACAGTGTGTTCCATGACTGGG
TAATAATATATAAAGTAATTTTATTAACTATTGATGAGTTAAAGTTACTT
TTAATGTTTTATATTTTGATTTTAATATTTAATATATGAACATATATGAA
AAACTGCAATATTTATCACAATGTCCATGATAAAGACCACTACCTTGGCA
ATTATTCTTTGGATAAAATTGATCAAAATAGGCACCAAAGCAAAAATAGC
CAGGTGTAATGTTATAAAGCAAAAAAAAAAAAATGTTGCATAGGCAAGGA
AGCAAAATTATGTAAAGCTAAGTTATTGAAAAAAATAGTTATTTAAATGA
TGCACATAAAATTTAATTTCTAAAATGTATTAAGGATTATTATGAATCAT
TATAAAAATGGAGAACCAAGGAATTTAAAAACTGGTTTTAGCTCCTTTAA
AAATGGCTCCAAACTCCCCCCAAAAAAAAATTTTTTCTCAAGAAAAATCT
CCTAAAAAATCCTCCGGGCAACGGTAAAAGGAATTTTCTATACCCTGGGT
GTGCCAAAACAATAAAAATTTGTAACTCCCGGGGGAAACTTATCATAGGG
GATTGGTTACTTGTTTTAAAA
CTGGCTTTTTTAAACGATGCGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGCCATCAGGCCCCCCNNNANANNANNGNN
NNNNNNGNGNGNCCTTTAAAAACCCCCCNNNGNNNNNNNGGGGGGGNAAN
NNNNGGGAGGNNAGNNNNNNGAANNANNANANATTTTGAAAATTCCCCTT
CTATNAGATGTGGAGTTAGTGAAGATTTTTTTCCCAATCTTTTCTTTGCC
GATTTGTCTTTTGACTATGTCCTTTGCCTTACAGAAGCTTTCCAGTTTCA
TGAGGTCCCATTTATCAATTCTTGATTTTAGAGCATGAGCCACTGGAGTT
TTGTATAGAAAATTTGCCTCTGTCCCAATGACCTCAAGGCTCTTTTTTTT
TTTCACNNNNANNAGANNNAGNNNANCGGNAGAAAAAGAAGACCCCCNGG
ANCCACCCACACNGGAGCNNGGGCAAGGNGACAAAAAAGGAGCGAGNNNC
ANNNCCANANANACNNANGGCCAGNNAGANCAGCACCANNAANGGAAGNG
GCNCNCNNNNNCNCCANGGCANANNNGGGGCNNCCNGGACAAAAGNNAAG
AGACCNAAAGAGGGGANNNANNAAGGNCCNNAGNCCCAANCCANNNANCA
ACGGNCCGGGCNCGGCACCACAACCAGGNAGNAANAANCACAACNNCCCG
GGAGNAAAGCNNAAGACCAGGGAAGGAGANNCNAAAANGGNAAAAGACAA
ACCGCACAACTTTTGGGANNGGNGCCNNACCAGAAGAAAAGGAAAANAGC
AAACGAAGAAAANGAAGGGAAGGGAAGGGAGAAAAGAAGGGGAAAACAGA
GAAAGAGGAGAGGAAGCAGGGAAAGAAAGAAAGAGGCACGGGGGGAAGGC
AAAAAAGGCGGGAGAAGGGAAAAGGGCACGAGAGACGGAAAGGAGCGGAA
GCCAAAGGAGAGAGAGGAAGGAAGAGACCAACAGGGAGAAAAGACGGGAG
GGAAGGCAAGAAAAAGAAGAAAAAAGAAAAGGGGGAAAGGGGGGGAAAGG
AGCAGAGCCAGGAAGAGAGCAGGAGGGCGGAAAACGGGGAAAAAGGAGAG
AGGAGAAAAAAACAAGGAAAGAAAAAAAAGAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_b16.b1 MSMg01no134_b16.b1 CHROMAT_FILE:
MSMg01no134_b16.b1 PHD_FILE: MSMg01no134_b16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:11 2005
         (292 letters)



>mm_chr4_78243060_78243751
          Length = 692

 Score =  526 bits (272), Expect = e-154
 Identities = 287/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttgtggtaaacattgaagtgacggttaaaacttcacatatgtgtatttagcgttttgg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atttgtggtaaacattgaagtgacggttaaaacttcacatatgtgtatttagagttttgg 260

                                                                       
Query: 61  atgacattaatgtcttgtatacagtgtgttccatgactgggtaataatatataaagtaat 120
           ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||
Sbjct: 261 atgacattaatgtcttgtatacagtttgttccatgactgagaaataatatataaagtaat 320

                                                                       
Query: 121 tttattaactattgatgagttaaagttacttttaatgttttatattttgattttaatatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttattaactattgatgagttaaagttacttttaatgttttatattttgattttaatatt 380

                                                                       
Query: 181 taatatatgaacatatatgaaaaactgcaatatttatcacaatgtccatgataaagacca 240
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 381 taatatatgaacatatatgaaaaactgcaatatttagcacaatgtccatgataaagacca 440

                                                               
Query: 241 ctaccttggcaattattctttggataaaattgatcaaaataggcaccaaagc 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaccttggcaattattctttggataaaattgatcaaaataggcaccaaagc 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)