Query= MSMg01no134_e19.b1 MSMg01no134_e19.b1 CHROMAT_FILE:
MSMg01no134_e19.b1 PHD_FILE: MSMg01no134_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:34 2005
(735 letters)
>mm_chr4_23352599_23353733
Length = 1135
Score = 1323 bits (684), Expect = 0.0
Identities = 723/738 (97%), Gaps = 5/738 (0%)
Strand = Plus / Plus
Query: 1 cagcatcatcaacactgagattacctgatgcgaacaaataatacaccagcagtgtctcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cagcatcatcaacactgagattacctgatgcgaacaaataatacaccagcagtgtctcca 257
Query: 61 tctt---tcacactatttctcttcctgtatgctttctagcatcttggatcaacaaaacag 117
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tcttgtatcacactatttctcttcctgtatgctttctagcatcttggatcaacaaaacag 317
Query: 118 ggcagaagttttagaaagatcctaaaataaataattttatttagtatagtacattattaa 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ggcagaagttttagaaagatcctaaaataaataattttatttagtatagtacattattaa 377
Query: 178 aagagctttaactatgctgaggctcctgatgtacataaatataaattaaattatttactt 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aagagctttaactatgctgaggctcctgatgtacataaatataaattaaattatttactt 437
Query: 238 agtatgtgtggtttgaagaaacataacatatatttggtactcttctttatttcaggaatt 297
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 438 agtatgtgtggtttgaagaaacataacatatatttggtactcttcatgatttcaggaatt 497
Query: 298 taccaagagtattttaatttattgcacatggataaaggagggtttactataaaatcttct 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 taccaagagtattttaatttattgcacatggataaaggagggtttactataaaatcttct 557
Query: 358 ccatcatggttactcaaataataataaaaaaaaaatacactgaaatttcatcattaccaa 417
||||| |||||||| |||||||||| ||||||||||||||| |||||||||||||||||
Sbjct: 558 ccatcgtggttacttaaataataat--aaaaaaaatacactgtaatttcatcattaccaa 615
Query: 418 acagaatagtaaacgttaaaaatcttggtcatatcaatgacttgaaaagggatgtaggaa 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 acagaatagtaaacgttaaaaatcttggtcatatcaatgacttgaaaagggatgtaggaa 675
Query: 478 atatattctctacatactataaatcaaattaaagtgcttacaaatacatatatatgaata 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 atatattctctacatactataaatcaaattaaagtgcttacaaatacatatatatgaata 735
Query: 538 tatataatgtgttcatatattatatatttttataatctatctatctatctatctatctac 597
|||||||||||||||||||||||||||||| ||| |||||||||||||||| ||||||||
Sbjct: 736 tatataatgtgttcatatattatatattttaatactctatctatctatctagctatctac 795
Query: 598 tgtcaatatatgtgtgtaggggtgacctatccggtgtaggggaaattatgctactagtct 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796 tgtcaatatatgtgtgtaggggtgacctatccggtgtaggggaaattatgctactagtct 855
Query: 658 ataagttactttgcatttacagagcattgtatatatgtattacatattataatatacatc 717
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 856 atgagttactttgcatttacagggcattgtatatatgtattacatattataatatacatc 915
Query: 718 ataaaatatataatgtac 735
||||||||||||||||||
Sbjct: 916 ataaaatatataatgtac 933
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 60
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 735
Length of database: 1135
Length adjustment: 10
Effective length of query: 725
Effective length of database: 1125
Effective search space: 815625
Effective search space used: 815625
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no134_e19.g1 MSMg01no134_e19.g1 CHROMAT_FILE:
MSMg01no134_e19.g1 PHD_FILE: MSMg01no134_e19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:34 2005
(749 letters)
>mm_chr4_23537405_23538553
Length = 1149
Score = 1379 bits (713), Expect = 0.0
Identities = 740/749 (98%)
Strand = Plus / Minus
Query: 1 aaatgaaaagagcaatagatctgtcatcccccttgtcaacacggtgtgatgaatcatatt 60
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct: 949 aaatgaaaagagcaatagatctgtcatctaccatgtcaacacggtgtgatgaatcatatt 890
Query: 61 aaataacactgagtgagtgagaggcaattccagagatgtgcttctgtgatccagaattgg 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 889 aaataacactgagtgagtgagaggcaattccagagatgtgcttctgtgaaccagaattgg 830
Query: 121 gaggtacatcagaagttacatttgggattttttttctaaatatgtaaaatcactttgcaa 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 829 gaggtacatcagaagttacatttgggattttttttctaaatatgtgaaatcactttgcaa 770
Query: 181 aaaaaaccccaaaacctactaaagaaattcaaagagaatagaaaatttcctcctagtaat 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 769 aaaaaaccccataacctactaaagaaattcaaagagaatagaaaatttcctcctagtaat 710
Query: 241 caaaacaataactaattaatgctcattatcttcctttttctataattcccaactttaacc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 709 caaaacaataactaattaatgctcattatcttcctttttctataattcccaactttaacc 650
Query: 301 catatttaatacaaaatgctctattacatcatgaatataatgaacatacacaaggtatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 catatttaatacaaaatgctctattacatcatgaatataatgaacatacacaaggtatat 590
Query: 361 aataaccaaggtagttcttaaacattccatttgggtcatcattaatttttatcatcattc 420
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aataagcaaggtagttcttaaacattccatttgggtcatcattaatttttatcatcattc 530
Query: 421 tatggagaagatattctatggagaagatcctagttctatatctttaacacaatcccagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tatggagaagatattctatggagaagatcctagttctatatctttaacacaatcccagtc 470
Query: 481 atttataagattgaaacatagttttgatatttttatattcattaattttagtcaatttga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 atttataagattgaaacatagttttgatatttttatattcattaattttagtcaatttga 410
Query: 541 gaggattgcatattcctcaaaatgtacacatccatttatgatctgcaaatgcactgattt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 409 gaggattgcatattcctcaaaatgtacacatccatttatgatctgcaaatgcattgattt 350
Query: 601 acgccatgctgaaaaaagaacaaaaactctgttttgctttttctcatttagtcttaactg 660
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 349 acgccatgctgaaaaaagaacaaaaactctgttttgctttttctcatttcgtcttaactg 290
Query: 661 cttcaaaggcttttcaatctcagttgaaaccttcatggtagattttctttgttttctttt 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 cttcaaaggcttttcaatctcagttgaaaccttcatggtagattttctttgttttctttt 230
Query: 721 tcttttccatttattaagaaataagctct 749
|||||||||||||||||||||||||||||
Sbjct: 229 tcttttccatttattaagaaataagctct 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 749
Length of database: 1149
Length adjustment: 10
Effective length of query: 739
Effective length of database: 1139
Effective search space: 841721
Effective search space used: 841721
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
