Query= MSMg01no134_f04.b1 MSMg01no134_f04.b1 CHROMAT_FILE:
MSMg01no134_f04.b1 PHD_FILE: MSMg01no134_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:36 2005
(317 letters)
>mm_chr4_124704464_124705180
Length = 717
Score = 605 bits (313), Expect = e-178
Identities = 316/317 (99%)
Strand = Plus / Minus
Query: 1 ctccatccctttgatccccagatgagggtacaagagcctcctcccagaaagaagattaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctccatccctttgatccccagatgagggtacaagagcctcctcccagaaagaagattaga 458
Query: 61 ttaatgtgtttctgatgcttcaacttggtgcaaaccagaataaacacgaatggcaaaaat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ttaatgtgtttctgatgcttcaacttggtgcaaaccagaataaacacgaatggcaaaaat 398
Query: 121 cagctcatgagctcatgcaggctttgatcagagacataatttcattatgaaattttgaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 cagctcatgagctcatgcaggctttgatcagagacataatttcattatgaaattttgaat 338
Query: 181 caggctgttatgaagtcttgccaaagagttttattttcccagatgatatggtgggttgtt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 caggctgttatgaagtcttgccaaagagttttattttcccagatgatatggtgggttgtt 278
Query: 241 tctctcctactcacctaccctgcttatgttcactgtacaaatttcccatctacttttaca 300
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tctcttctactcacctaccctgcttatgttcactgtacaaatttcccatctacttttaca 218
Query: 301 gcctgacctatcaaccc 317
|||||||||||||||||
Sbjct: 217 gcctgacctatcaaccc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no134_f04.g1 MSMg01no134_f04.g1 CHROMAT_FILE:
MSMg01no134_f04.g1 PHD_FILE: MSMg01no134_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:37 2005
(184 letters)
>mm_chr4_124557561_124558136
Length = 576
Score = 263 bits (136), Expect = 4e-75
Identities = 169/184 (91%), Gaps = 8/184 (4%)
Strand = Plus / Plus
Query: 1 cctcagcacagagcatggttttcagtaagtgttagctggaggggtgactagtacacatct 60
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct: 201 cctcagcacagagcatggttttcagtaagtgttagctggagaggtgaggagtacacatct 260
Query: 61 aaccaaaatgtgcaggtgctgccccccccccccagtgcatgcatgaccccacccccaccc 120
|| |||||||||||||||||| ||||||||| ||||||||||||||||| |||||
Sbjct: 261 aagcaaaatgtgcaggtgctggacccccccccaagtgcatgcatgacccc-ccccc---- 315
Query: 121 ccagtgcatgagtgacccacactccaagcttttctggctgctgtagcacctgaagagaga 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ---gtgcatgagtgacccacactccaagcttttctggctgctgtagcacctgaagagaga 372
Query: 181 gggg 184
||||
Sbjct: 373 gggg 376
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 184
Length of database: 576
Length adjustment: 8
Effective length of query: 176
Effective length of database: 568
Effective search space: 99968
Effective search space used: 99968
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
