BAC Information

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BAC

Clone NameMSMg01-134F10
Chromosome4 (Build37)
Map Location 6,940,112 - 6,940,363
singlet/doubletsinglet
Overlap genenone
Upstream gene3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414, Tox, LOC100039421
Downstream geneLOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134F10.T7 (MSMg01no134_f10.b1)MSMg01-134F10.TJ (MSMg01no134_f10.g1)
ACCAG341077AG341078
length1,1751,263
length of high quality
(start - end)
253 (198 - 450)99 (74 - 172)
definitionCHROMAT_FILE: MSMg01no134_f10.b1 PHD_FILE: MSMg01no134_f10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:38 2005CHROMAT_FILE: MSMg01no134_f10.g1 PHD_FILE: MSMg01no134_f10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGGGCTCATTGGGCGCTATAXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGGACCATAAAATAATTTTAAACGGACTCTATTAGCAAACACATAT
CCAGCAATGCCTTTACCTGACAGTTTGATTTTTGAGATGGACAGAGGGGA
AAGTTTGCCTACTTTTACTCATATGAGATAATTCTCAATGAATACTTCCA
TTCACTAAATCCAAGCCTCAGCTTTTGAAAGTGGTCCTATACACTATTTT
CATTTTGATAAAGTAATGAGCAATGTGGCTTCTGAAGCCACTCTTTTCCT
GTGTAGTTACCAGTATCTGAATTTTTGGTTGACATCTGAAATAAATACAT
GCTGGAACACCAGTGTTCTTATTTAGAAATCCAGTTATTAACCATATCCT
GGCTCACCACAGGCCAAGTCTGCAACCTGAACCCCAGGTTCAATACCCCT
TCTGTGTCCACTTAGCATACTCTCAACAGCACACCCTTCTCCTCACCATA
CTCTGGTTCACAACTCTGACAGATGCCCCATGTTCCATCAGAGGCAACAC
TGGCAAGCAGAGTGCCGTGAAAGCCTTGCATTCTCCAGAATACCAACATT
TTCTCCTGCCATGTTCTGATTATTCCCTCCTGTCCCTCCTCACCAACTCT
AGCCCATAACTCCAGTAGAAACCAGCTGCCCCACCAGAGGCCACACCTGC
CTTCAGAAAGCTGCTTTCCCATGAACCACCCCCACTTTCTCAGTTCCTGC
CAATGCCACCCCCAACCATGTTTCCCCTCTGTGGTGTACTGATATCCTAG
ACCTAAACTCCAGTAGAGGTCCCTTGCTAGACCAGGGGACATGTCCCAAC
ATAAATATCCCCAATCTTGGGTGGAGACACTTCTTATTCACCCCAATCCC
GAGAGAGATATTGAGAGAGATAGATAGTGAGCGAGCATTCAGATTGTACA
TAGATATATCCTTTTCTTGTAATTATCATCCCCACCACTTTATCTTCCCT
TTAAATTCCAGCCTTGCTCACTTATTTTTTTCCCCTATCCTTTGTTTAAG
AGTCCCCTCTTTTAATCTTTTTCTTCAACTCTCTCAATTCTATTTTTTCT
CCTACACTCCTCTCTCTCCTTTCTTTCTCAATGTTCCTCCTTTCCTCTCC
TTTTTCACCTCTTTCTTTTCCACTC
TTTTNTGAAGCATGGAAGGCTGGGGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCAGGCAAGCTTTGAATCTTGGGGAAA
AAGAGAGAGCCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAAGATTTTGCTGCTGGNATGGAATTCTTTAAGGAGTCCCCCCC
TAANGGNNANAATTCTGCTCTGACCTGCAGCCTGCTTTAAGAGTGGCACG
GACTGGCTGGATGGTCATGAAGTACTGAATACCCCAGGTCCGTCTGAATC
CCACCCAAGGTGATTCCTAATCAGAAGTTTAACTAAACACAGTTAACATT
CCTCAACAGACTCCTATACTCCCCTAAATTCTGCGCTCCTGGGCTCCTTT
TTTTTTCATGCCCTTGCCTAGAACACCCTTGTGTCTTCTAGCACCCCCCC
TTTTTTTTTCCCCCCCCCCAAGACTCCCCCCCCCCCCCCCCCAAAAAAGG
GGGGTCTTTTTCTGCTCTCTCTCCTCCCACGCTCCTTTCCGCTTTCCCCT
CCTCTTCCCCTTCCCTGTCTTCCCCTCTCCCTCTCCCCTCCTCCCTCCCC
CTCCTCCCCTTCCCCTCTCCTCTTTCCTTTCCCCTCGTTCTTCTTCTCCT
CTCCCCTTCTCTTTTTCCTCTTTCCGCTCTCTTCCTCTCCTCTCTCTTCT
TTCCCCTTCTCCTCTTCCCTTCCCCCTCCCCCCTCTCCCCCTGCTCCCTC
TCTCCTCCCTCTCTTCTTCCCTCCTTCTTCCTCTCTCTCTTTCCTCCTCC
CCCTTCTTCCCTCCTTTCCTCTCTCCTTTCCCCCTCCTCCACTTCCCTCT
CCCTCCCTCTCCCTCCTTCTCTCCCTTCCCCCCCTCTCTCCCCCCCTTCT
TCCTCCCCATCCTTCCCCCTCTTTCTCTCCTTCTCCCTTTCCCCCTCTCC
TCTCTCCCTCCCCTCTCTCCCCCCCCTTCTCTCCCTCTTCTCTTCCCACT
CCCCCCCTCCCCCCTCCCTCTCCCCTCTCCCCCTCTCCTCTCCCCCTCCC
CTCCCTCCCCCCTCCCCTCTCTCTCTCTCCCTTTTCTTCCCTTTCTTCCT
CTCTCCTCCTTCTCTTTCTNTTTTCCTTCCTTTTCCTTCTTCTCTCTTCC
TCTCCCCTTCCTTCCCCTCCTCCCCTCCTCCCCTCCCCCTCCCCCTCCCC
CTCTACCCTCTCCCTCCCCCCCTCCCCCTTCCTCCCTCTCCCTTCTCCTT
CTCCTCCTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_f10.b1 MSMg01no134_f10.b1 CHROMAT_FILE:
MSMg01no134_f10.b1 PHD_FILE: MSMg01no134_f10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:38 2005
         (253 letters)



>mm_chr4_6939912_6940564
          Length = 653

 Score =  472 bits (244), Expect = e-138
 Identities = 250/252 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccattcactaaatccaagcctcagcttttgaaagtggtcctatacactattttcattttg 60
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ccattcactaactccaagcctcagcttttgaaagtggtcctatacactattttcattttg 393

                                                                       
Query: 61  ataaagtaatgagcaatgtggcttctgaagccactcttttcctgtgtagttaccagtatc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ataaagtaatgagcaatgtggcttctgaagccactcttttcctgtgtagttaccagtatc 333

                                                                       
Query: 121 tgaatttttggttgacatctgaaataaatacatgctggaacaccagtgttcttatttaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 tgaatttttggttgacatctgaaataaatacatgctggaacaccagtgttcttatttaga 273

                                                                       
Query: 181 aatccagttattaaccatatcctggctcaccacaggccaagtctgcaacctgaaccccag 240
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 aatccaattattaaccatatcctggctcaccacaggccaagtctgcaacctgaaccccag 213

                       
Query: 241 gttcaatacccc 252
           ||||||||||||
Sbjct: 212 gttcaatacccc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 653
Length adjustment: 9
Effective length of query: 244
Effective length of database: 644
Effective search space:   157136
Effective search space used:   157136
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)