BAC Information

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BAC

Clone NameMSMg01-134G04
Chromosome4 (Build37)
Map Location 45,836,374 - 45,971,692
singlet/doubletdoublet
Overlap geneIgfbpl1, 1300002K09Rik
Upstream geneZcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1
Downstream geneTdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134G04.T7 (MSMg01no134_g04.b1)MSMg01-134G04.TJ (MSMg01no134_g04.g1)
ACCAG341113AG341114
length1,2161,225
length of high quality
(start - end)		717 (86 - 802)796 (91 - 886)
definitionCHROMAT_FILE: MSMg01no134_g04.b1 PHD_FILE: MSMg01no134_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:44 2005CHROMAT_FILE: MSMg01no134_g04.g1 PHD_FILE: MSMg01no134_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:44 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,836,374 - 45,837,090)(45,971,202 - 45,971,692)
sequence
NCCCACCTTTNNTAAACAATGGGCGCTAAGACTCCTAAGGGAGAGGATCC
GCGGAATTCCACCAAGGTGAATTTCCTATAAGTCTCAGAGAAGCTGCTGG
GGCTCAAAGGCCTGACACTGGGGGATGACAGCGATCTGCCAAGAGTCAGG
AAAACTGACCTGCAGCCCTGCCTCAGCTGGGGTCAGCCGTGCAGCTCCAG
GAAATCCCCTTGGGTGTGCCTCAATGTTCCCTTCTATTAAGGCAGTGGTT
CTCAACCTGTGGGTTGAAACCCATTTGGGGATCAAATGAACCTTTCACAG
GCGTCGCCTAAAACCGTTGGAAAACACAGATATTTACATTACGATTCATA
ACAGTAGCACAATTACAGTTATGAAGTAGCGACAAAATAATTTTATGACC
GGGGGTCACTACCACATAAAGAACTATATTAAAGGGTCGCAGCGTTAGGA
AGGTCTAGGAACTCTGCCTTAAGATGGGTAAGATCCGCTCCCTCTCGTGG
CTGCAAAAATCAAGGACAACAATAGGTACAAAGGCGATGTCTAACAATAA
AATATTCACACACAGGCCCTCCGGGTACAAAGATCAAAGGGCGCTCTAAT
ATTAGGTAGTGGGCAGCTCTGAGCAAAGGCTTCTGGGAAGGGCAGTTTGC
CACCACTGTCCCAGGGAAGCATCACAGAGGCACTGTCACCACTCGGAAGG
AGATAATCAATAATGAACCATCACTCCATTAAAGTGGAGGTGCCTGGGAG
GAGCTGAGGAGTGACTGTCACCAACACTCAAGTAAAACTGTCTGTTTCCC
TTCAAACAGGGTCCCCTGGGGCTTTGTTAAAAGTGCTCCCGCTGTGTCTT
TTTGAATTAAAGATGGCTTTAGGGCAGCCCAGAATGAGGTGCATCTAGTG
TAGGAAAAACAGTCCTCTCGGGGAAGAGGGGCCATACCTCCCCCGAGAAC
CAAGGACAAGGACTCCTCAAGTTTTGTGAAAAAATAGGGTACTGGGGAAC
TTCTTTTGGTCCTGAGAGGGGGGTAACAACACGGGTGGTTAATAAAACTT
TTCTTCCACAAGTCTTAATCCTTTCCCTCATAATTTCCTGTTAGTATTCT
CTTCTATATTTCCTATTTGTTTTGAAATACCTTTTTTTCCTTCACTCATA
TCTCTTCTTGACTCCCTACTATCTCTTAATTTTCTCTTCTCTCTTATTCT
CTCTTTCTTTCCTTTC

NCCCAATTTTTTNNNNAACATGTGAGGCGGCXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTTTAAAACACAAGAGGAAGA
GAAAGAAAGGATATTAGAACAAATAATAACAGGAAACTTTACCAATGAAT
GAAATTAACCTACAAACATGAAAAAGCTCAACAGACTCCCACTAACATGT
GTTTCACCGAGACTGTCACAGGAGATACATGGATGACAAGTAAACATGTG
AGATGTCCAACAGCATAAGTAGTTGGGGCATATCCACATACATAACAATG
AGAGTCCCACCAAGCATCTATGAGAATAACTGAAATACAAAAAGCCAACG
ACATTTAGTGCTGACAACTGTGTGGACCACACTGCTGCTGGGAGTGCAAA
CTGGTAGGTATCTTAGAAGACAGAAGGAGCAATTTTTAATGAAACTAAAC
ACAGTCTTAGCATGTCTTAGTTAGGGTTTCTACTGCTGTGATGTTATACC
ATGGCCAAAAGCAACTTGGGGAGCAAAGAATTTATTTCATCTTATAACTC
TCCATCATTGGAGGAACTCCATCCCATTCCATGTCAGGACTGAAAGACAG
GTGATCTGGGAACTCACACAGTCGTCAGTCCAAGATTGGTATGTACTGTC
TGCCTTCACATTTATTTTAAATCTGAGAAAGAAATCTCTTTCATGTCACT
GCTGTTTGAAGGACTGTAGTAAAATCACACACTGAGTAAGGATGTTTAGG
TCAGTAAGGGACCATACATATGACTATAAGGTCCCTTAAGCTTATATGGA
GCTGAAAGAGTCCTGTCTCCTAGGGATGGCACAGCTGTTGTAATTACTGC
CCTCATGTCATGCTTCCTCCCATGTTTACCCTGCTGCTGGTATAAACTAT
TTTAAAGGTGCAATTATCTACAGCGTGTTATTATTATTACCAAATGACTA
CCACCGGGCTTAGCATTTTATGAACCTGTACCCTGGTTCCTTTTGAAAAA
AACACTTACTTTTTAAAAAAAAACACCCTGGCTAGTAAAATTCCCTGTAT
AAACAAATGCTTTTGTTAAAAAAAAAAAACCCCCTCAACCCCTGTGGTGT
CTTTTAAATTCCCTGCTGCGGGGGGAAAAACATATTCAGGTAATTGTCCA
TACCAATGTTGGTCCTCTCGGTTTTCCTCCTTTAAAACCACTTAATATGT
GTCTTCCAAATATTTCACGTGGTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_g04.b1 MSMg01no134_g04.b1 CHROMAT_FILE:
MSMg01no134_g04.b1 PHD_FILE: MSMg01no134_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:44 2005
         (717 letters)



>mm_chr4_45836174_45837290
          Length = 1117

 Score = 1363 bits (705), Expect = 0.0
 Identities = 714/717 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cagagaagctgctggggctcaaaggcctgacactgggggatgacagcgatctgccaagag 60
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 201 cagagaagctgctggggctcaaaggcctgagactgggggatgacagcgatctgccaagag 260

                                                                       
Query: 61  tcaggaaaactgacctgcagccctgcctcagctggggtcagccgtgcagctccaggaaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcaggaaaactgacctgcagccctgcctcagctggggtcagccgtgcagctccaggaaat 320

                                                                       
Query: 121 ccccttgggtgtgcctcaatgttcccttctattaaggcagtggttctcaacctgtgggtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccttgggtgtgcctcaatgttcccttctattaaggcagtggttctcaacctgtgggtt 380

                                                                       
Query: 181 gaaacccatttggggatcaaatgaacctttcacaggcgtcgcctaaaaccgttggaaaac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gaaacccatttggggatcaaatgaacctttcacaggcgtcgcctaaaaccgttggaaaac 440

                                                                       
Query: 241 acagatatttacattacgattcataacagtagcacaattacagttatgaagtagcgacaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acagatatttacattacgattcataacagtagcacaattacagttatgaagtagcgacaa 500

                                                                       
Query: 301 aataattttatgaccgggggtcactaccacataaagaactatattaaagggtcgcagcgt 360
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aataattttatgactgggggtcactaccacataaagaactatattaaagggtcgcagcgt 560

                                                                       
Query: 361 taggaaggtctaggaactctgccttaagatgggtaagatccgctccctctcgtggctgca 420
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 561 taggaaggtctaggaactctgccttaagatgggtaagatcccctccctctcgtggctgca 620

                                                                       
Query: 421 aaaatcaaggacaacaataggtacaaaggcgatgtctaacaataaaatattcacacacag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aaaatcaaggacaacaataggtacaaaggcgatgtctaacaataaaatattcacacacag 680

                                                                       
Query: 481 gccctccgggtacaaagatcaaagggcgctctaatattaggtagtgggcagctctgagca 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccctccgggtacaaagatcaaagggcgctctaatattaggtagtgggcagctctgagca 740

                                                                       
Query: 541 aaggcttctgggaagggcagtttgccaccactgtcccagggaagcatcacagaggcactg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaggcttctgggaagggcagtttgccaccactgtcccagggaagcatcacagaggcactg 800

                                                                       
Query: 601 tcaccactcggaaggagataatcaataatgaaccatcactccattaaagtggaggtgcct 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 tcaccactcggaaggagataatcaataatgaaccatcactccattaaagtggaggtgcct 860

                                                                    
Query: 661 gggaggagctgaggagtgactgtcaccaacactcaagtaaaactgtctgtttccctt 717
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 gggaggagctgaggagtgactgtcaccaacactcaagtaaaactgtctgtttccctt 917


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 717
Length of database: 1117
Length adjustment: 10
Effective length of query: 707
Effective length of database: 1107
Effective search space:   782649
Effective search space used:   782649
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)

Query= MSMg01no134_g04.g1 MSMg01no134_g04.g1 CHROMAT_FILE:
MSMg01no134_g04.g1 PHD_FILE: MSMg01no134_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:44 2005
         (796 letters)



>mm_chr4_45970497_45971692
          Length = 1196

 Score =  942 bits (487), Expect = 0.0
 Identities = 490/491 (99%)
 Strand = Plus / Minus

                                                                        
Query: 306  gcaaactggtaggtatcttagaagacagaaggagcaatttttaatgaaactaaacacagt 365
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1196 gcaaactggtaggtatcttagaagacagaaggagcaatttttaatgaaactaaacacagt 1137

                                                                        
Query: 366  cttagcatgtcttagttagggtttctactgctgtgatgttataccatggccaaaagcaac 425
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1136 cttagcatgtcttagttagggtttctattgctgtgatgttataccatggccaaaagcaac 1077

                                                                        
Query: 426  ttggggagcaaagaatttatttcatcttataactctccatcattggaggaactccatccc 485
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1076 ttggggagcaaagaatttatttcatcttataactctccatcattggaggaactccatccc 1017

                                                                        
Query: 486  attccatgtcaggactgaaagacaggtgatctgggaactcacacagtcgtcagtccaaga 545
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 attccatgtcaggactgaaagacaggtgatctgggaactcacacagtcgtcagtccaaga 957

                                                                        
Query: 546  ttggtatgtactgtctgccttcacatttattttaaatctgagaaagaaatctctttcatg 605
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 956  ttggtatgtactgtctgccttcacatttattttaaatctgagaaagaaatctctttcatg 897

                                                                        
Query: 606  tcactgctgtttgaaggactgtagtaaaatcacacactgagtaaggatgtttaggtcagt 665
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896  tcactgctgtttgaaggactgtagtaaaatcacacactgagtaaggatgtttaggtcagt 837

                                                                        
Query: 666  aagggaccatacatatgactataaggtcccttaagcttatatggagctgaaagagtcctg 725
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836  aagggaccatacatatgactataaggtcccttaagcttatatggagctgaaagagtcctg 777

                                                                        
Query: 726  tctcctagggatggcacagctgttgtaattactgccctcatgtcatgcttcctcccatgt 785
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776  tctcctagggatggcacagctgttgtaattactgccctcatgtcatgcttcctcccatgt 717

                       
Query: 786  ttaccctgctg 796
            |||||||||||
Sbjct: 716  ttaccctgctg 706


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 796
Length of database: 1196
Length adjustment: 10
Effective length of query: 786
Effective length of database: 1186
Effective search space:   932196
Effective search space used:   932196
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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