BAC Information

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BAC

Clone NameMSMg01-134H06
Chromosome4 (Build37)
Map Location 65,458,492 - 65,459,203
singlet/doubletsinglet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134H06.T7 (MSMg01no134_h06.b1)MSMg01-134H06.TJ (MSMg01no134_h06.g1)
ACCAG341164AG341165
length1,1671,178
length of high quality
(start - end)
304 (493 - 796)712 (143 - 854)
definitionCHROMAT_FILE: MSMg01no134_h06.b1 PHD_FILE: MSMg01no134_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:52 2005CHROMAT_FILE: MSMg01no134_h06.g1 PHD_FILE: MSMg01no134_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:52 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNGGGCGCAGTGGGCGCTAAGACTCACTAAGGGAGAGGACCGCGGAATTC
TCTTAAGATCATATTTCTCTGGAAAACACATGCTAAATCAATGGCACCCA
TCCTTCTGTTAGAAGAACAGATACTACCCAGAAAAGGAGGGACTCCTTGC
TCAGCTTTGCATCTCAAAGCAGGCTTTCCTAAGACTCAACCCCGACAGCT
CCAAAAACCCTTCTTTTTATATAAAAAAAACCATGCTTGGCCACCTCAGA
TCATTGTGTTTTATTTTAACATAGAAACGACATTGCAGGTAATGACCTTA
AGGGAGTTCCGCTAGACAGGAAAAGAAAAGCCTTTCTTTCTGTCACTAGT
GCTTCAAGAAGCTGCTGAAGAAGAAGAATAAAAAGCCAGAGTTCAATTGG
GGATGTTCCCGAGACCCTCATACAGTCGCAGTCTTCGAGAAATGTTTTGT
TTCCCCCCCGCAATGAAGAACAAGGCCGATAACAAAAATGGCTAAAAGGC
ACATAAAAGTTGGTTGAGGGCCCTGTGATCCATCCAATACCTGACTGTGA
GCATCCATTTCTGTGTTTGCTAGGCCCTGGCATAGCCTCACAAGAGGCAG
CTATATCTGGGTTCTTTCAGCAAAATCTTGCTAGTGTATGGGCCCCCAAT
GGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGTCTGCAACCCTATA
GGTGGAACAACAATATGAACTAACCAGTAACCACTCCCCCCCACCCCGAG
CTCGTGTCTCTAGCTGCATATGTATCAGAAGATGACCTAGTCGGCCATCA
TTGGAAAGAGAGGCCCATCGGGCTTGCAAACTTTATATGCCTCAGTACAG
GGGAACGCCAGGGCCAAGAAGTGTGTGTGTTTGCTTAAGGGAGTGGAAGC
TCTCTTCTTTTTTTCTTCTTACCTCCTCTCTTCCATTTACACATTTCACT
CTCTTCTCTCTTTCTCCTTATTCCCTCTATTATCCCTATCCTCTATGTTC
TTCTCACACTCTCTCTCTCTTCTTCTCTCCTTTTCTTCTCTCTTCTCTCT
CTTCTTCTCCACTATCTCTTCACGTATATCTTTTCTCACTCCTAATTATA
CTCACATATCCATCTCCATTCTCCTCTCTCATATCCTCCTATTTATATCA
TCTCCTCTATACTTATC
NCCATTTCTTTTTNATACCATGGTAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTATAACTCCCCCGAAGAGA
AGGATCTATGAAAGACAGACCCTTAAAGTGCTCCGAAAACCATTTGTCTG
TGGTCACTGCTGCATCCTAGGACATAGAACAGGATCTAGTACCTATTAAT
TATCTAATCAATAAACATGTAAGAAGTGTGTGTACATGAGTGAATGGATG
AATGAGTAAAAGAATTTAATCAGTTTTCAAGGTGTCTTGGTATTTCATCA
GGAAAATAATTCTGAGATAATTATCTTAGGCAGAAAGGAAAATGTGATTA
GCATTCAGATGGCATGCAGGTCATAAGGCAATAATCAAAACTGCAGGTTT
TATAGCATTTTAAACTTTAGATTTTTAGGAATACAGGTGTTGAATAAATT
AAGTGTATGTGATCTATACTGCTTGCCACCTCCAAAACTCCTAAGTAAAA
GACATTTCTCGTTCCAAGCATGGGTTAACACTCAGACTGAACATACTGAT
ACATGTTCTATCACCCAGGCTGGACTCTTTTCATCTTGATGTAAGCATTG
GCAGCTGCCAGGCATGAATCTTTAGTATCCTTTAGCCACAGAGAACTTCC
TTGCCCAATGATACCCACTTGTTCTCTTTTGGTCAGCAATCCATTCAACA
GCCAAAGGATGTGGGAATGCAAAGGCCCAAGTGCTTTGTTATCATCTGGG
ATGTCAATAAATGTCCTCTTGAGACCCTGAACTCGACATGGTATCAACTG
ATGCTTTACTGTGGGTCCTTTACCAAGTCTTGACTTGCTCTCTTTGTACA
GATTCATCTCTCAAGAGGAGTTCCCAATCATCCGCCTGGGTATAACTGTA
TTCCAGAATCTGTTTTTAATATGACTGACCTAAGGTTCAGTATTCCAATA
AGAAGAAGCCAGGAAACCCTTGCCATAAAAAATATGAGAAGTCCGTAAAT
TAGGGTCAAATAATCCTCCAAATAGGTTTTCCTTAAGGAATATAGGTGTA
TTAAACCACGTTTTTGAATTAAATATTTTTTTTTTTAAAAACCACTATTT
TTCGCTTGCTTTAAGAAAAAAACTCTGGTACCACGGGCATTTTATAAAAA
ACACTTTTATATTCGCGCCTCCCTCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_h06.g1 MSMg01no134_h06.g1 CHROMAT_FILE:
MSMg01no134_h06.g1 PHD_FILE: MSMg01no134_h06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:52 2005
         (712 letters)



>mm_chr4_65458221_65459332
          Length = 1112

 Score = 1284 bits (664), Expect = 0.0
 Identities = 700/712 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttgtctgtggtcactgctgcatcctaggacatagaacaggatctagtacctattaatta 60
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 983 tttgtctgtggtcactgctgcatcccaggacatagaacaggatctagtacatattaatta 924

                                                                       
Query: 61  tctaatcaataaacatgtaagaagtgtgtgtacatgagtgaatggatgaatgagtaaaag 120
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 923 tctaatcaataaacatgtaagatgtgtgtgtacatgagtgaatggatgaatgagtaaaag 864

                                                                       
Query: 121 aatttaatcagttttcaaggtgtcttggtatttcatcaggaaaataattctgagataatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 863 aatttaatcagttttcaaggtgtcttggtatttcatcaggaaaataattctgagataaat 804

                                                                       
Query: 181 atcttaggcagaaaggaaaatgtgattagcattcagatggcatgcaggtcataaggcaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 atcttaggcagaaaggaaaatgtgattagcattcagatggcatgcaggtcataaggcaat 744

                                                                       
Query: 241 aatcaaaactgcaggttttatagcattttaaactttagatttttaggaatacaggtgttg 300
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 743 aatcaaaactgcaggttttatagcattttaaactttaggtttttaggaatacgggtgttg 684

                                                                       
Query: 301 aataaattaagtgtatgtgatctatactgcttgccacctccaaaactcctaagtaaaaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aataaattaagtgtatgtgatctatactgcttgccacctccaaaactcctaagtaaaaga 624

                                                                       
Query: 361 catttctcgttccaagcatgggttaacactcagactgaacatactgatacatgttctatc 420
           || |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 cacttctggttccaagcatgggttaacactcagactgaacatactgatacatgttctatc 564

                                                                       
Query: 421 acccaggctggactcttttcatcttgatgtaagcattggcagctgccaggcatgaatctt 480
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 acccaggctggactctcttcatcttgatgtaagcattggcagctgccaggcatgaatctt 504

                                                                       
Query: 481 tagtatcctttagccacagagaacttccttgcccaatgatacccacttgttctcttttgg 540
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 tagtatcttttagccacagagaacttccttgcccaatgatacccacttgttctcttttgg 444

                                                                       
Query: 541 tcagcaatccattcaacagccaaaggatgtgggaatgcaaaggcccaagtgctttgttat 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 tcagcaatccattcaacagccaaaggatgtgggaatgcaaaggcccaagtgctttgttat 384

                                                                       
Query: 601 catctgggatgtcaataaatgtcctcttgagaccctgaactcgacatggtatcaactgat 660
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 383 catctgggatgtcaataaatgtcctcttgagtccctgaactcgacatggtatcaactgat 324

                                                               
Query: 661 gctttactgtgggtcctttaccaagtcttgacttgctctctttgtacagatt 712
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 323 gctttactgtgggtcctttaccaagtcttgactcgctctctttgtacagatt 272


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 712
Length of database: 1112
Length adjustment: 10
Effective length of query: 702
Effective length of database: 1102
Effective search space:   773604
Effective search space used:   773604
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)