BAC Information

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BAC

Clone NameMSMg01-134H13
Chromosome4 (Build37)
Map Location 37,989,611 - 37,989,983
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC545600, LOC621458, LOC277771
Downstream geneLOC100039448, LOC665520, LOC100039487
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134H13.T7 (MSMg01no134_h13.b1)MSMg01-134H13.TJ (MSMg01no134_h13.g1)
ACCAG341178AG341179
length1,1861,213
length of high quality
(start - end)
389 (61 - 449)369 (82 - 450)
definitionCHROMAT_FILE: MSMg01no134_h13.b1 PHD_FILE: MSMg01no134_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:54 2005CHROMAT_FILE: MSMg01no134_h13.g1 PHD_FILE: MSMg01no134_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:49:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNGCGCATTGGGCCTATAGACTCACTAAGGGAGAGGATCCGCGGAATTC
CTCAACTAATAAAATTATTTTGAGGGCCCTTAGATATATATGACTCAGGA
GCTATATACACATGTGGCTAAGCATCATAACATAAAGTGTATTACTGACA
CTCAAAGGGACAAGGGTAGAACTTCTACCAGCTGGACCCTGACCTCCACA
TATGCCATATTACTCACATCTGTACACATGTGTGTGCCTATAAACACACA
TGAAAACACACACATGAAAACACACACATGAAAACACACACATGTAAGTA
TGCACACACATGTAAGCATACCAACACACAAAAAATTAAAAACTATTTAA
CATATATAAACCTGAGTATTGTTTCTTGCATTAAAAATGTGTGTGTATGT
TTGTGCATGTTTGTGTGTGCTTGTGTATGTGTTTGTATTGTTATGTATTT
TTTCCCCCCCCCTGCTGGNATATGTCTCTGAAAAAAAAAGAGTAGAAAAT
AAACTTGCAATCACTGTCCATTTTTCTGCTTTATTCTATGAGACAGACTC
TTTCGCTGGACTTTAAAGTCAAGTTGTTTTGTCTTGACTCTCTTGTCTGT
GAACTTCAGGATGTAGCTCTTTCTCCTTCCCTTAGTGCAGGAGTTATCTT
CACTAGTCCTGTATGTACTATTTTCAATGAAAAATACTATTTTAAATAGC
TTTGTCTATAATAAAACATACTTTTAGAGTTGATAGATGATATTAAAGAA
GTGTTCATTGCAGATTATATTCTATCAAAATATGTATAATTTATTACATT
TAATATTTATCTCCTAATTAATTTATTTTTCTAATTACTTCTTTCATTTC
AAAACTTTTTCATGGTGAAGGATTTTATCTTTTAACCTTATTAAATTTCT
CTTTTTTATTATGTTTTTTATTTTTATATTTCTATTTCTCTTACTCTTCT
CTTTTTGTTTTTTACTTTAACCGATTATTTCTTTTCTATTTTTTTTTATT
CTTTTTTTCTTTTTAAGTTTTCATTTTTCTCATTTTACTTTTTTTTTTTT
CATTTTCTCAATTTATATATTTTTCTTCTTTTTTTTCTTTCTATTTCTAT
TTTCTTCTTTTTTCTCTTTATTTTATTTTTTCTATTATTTCATCTTTCTT
TTTTCTTTACTCTTTATCTTCTTATTAAATATTTCT
CATTTTTTNNNNCTCAAGGAGNCTGGGGCGCCXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTTTTTTGTTTAGCTCTGTACCCAATT
TTTTAATGAGGTTACTTGAATTTCTGGAGTCCCGCTTCTTGAGCTCTTTG
TTTATATTGGATATTAGTCCCTTATCAGATTTAGGCTTGGTAAAAATCCT
TTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTGACAGTGTCTTTTGCCT
TACAGAAGCTTTGCAATTTGATGGGGTCCCATTAGTCAATTCTTGATCTT
ACAGGGAAAGCCATTGCTGTTCTGTTTAGGAATTTTTCACCTGTGCCCAT
ATCTCGAGGCCTTTCCCCACTTTCTCCTCTATGAATTTCAGTGTCTTTGG
TCTTATGTGGAGGTCTTTGATCCACTTAGACTTGAGCTTTGTACTAGGAG
ATAAGAATGGATCAATTTGCATTTTTCTACATGATAACCGCCAGTTGTGC
CAGCACCATTTGTTGAAAATGCTGTCTTTTTTCCACTGGATGGTTTTAGT
TCCCTTGTCAAAGATTAAGTGACCATAGGTGTGTGGATTCATTTCTGGGT
CTTCAATTTTATTCCATTGTTCTACCTGTCTGTCATTGTACCAATACCAC
GCAATTTTTATCACAATTGCTCTATAGTACAGCTTATTGTCAGGCATGGT
GATTCCACCAGAGGTTTCTTTTATCGTTGATAATAGTTTTTGCTATCCTA
GGTTTTTTTTTATTATTATTTCATATGGATTTTGCCTATTTATTTTGTAA
TATTTTTATNATCGATGTCTTATTATTTCTCTTTTAACAATATTCCCTTG
CTTCTTTTCTCCTTTGATCTTGATTGATTTTTTTATTTTTTTTCTCTTTT
TTTTCTTTTTTTTCTTTCTCTTATTTTCATTTACTTCAATCTTTATTTTT
TTTTAATTCTTCTCCTTTTCCTTTTTTTCTAGCTTCTTCTTGTATCTTTT
TTTCTTTATCTTTTATTCCTCTCTTTTACTCATTCTCTTTTTCTTTTTTT
TATTCATTATTTTCTTTCTTCTTTTTTTGTTTTTTACTCTCTTACTATTT
CTTTCCTTCCTTTCCTTCTTGTCTCTTCTTTTTATTTCTTTTTCTTCTTT
TCTTACTTATCTCTTATATCTAATTTTTATTATTCTTTCTCTTTTCTTAT
CTTTCCTCTCCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_h13.b1 MSMg01no134_h13.b1 CHROMAT_FILE:
MSMg01no134_h13.b1 PHD_FILE: MSMg01no134_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:49:54 2005
         (389 letters)



>mm_chr4_37989411_37990199
          Length = 789

 Score =  652 bits (337), Expect = 0.0
 Identities = 368/387 (95%), Gaps = 14/387 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaattattttgagggcccttagatatatatgactcaggagctatatacacatgtggcta 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 aaaattattttgagggcccttagatatatatgactcaggagctatagacacatgtggcta 260

                                                                       
Query: 61  agcatcataacataaagtgtattactgacactcaaagggacaagggtagaacttctacca 120
           ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 agcatgataacataaagtgtattactgacactcaaagggacaagggtagaacttctacaa 320

                                                                       
Query: 121 gctggaccctgacctccacatatgccatattactcacatctgtacacatgtgtgtgccta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctggaccctgacctccacatatgccatattactcacatctgtacacatgtgtgtgccta 380

                                                                       
Query: 181 taaacacacatgaaaacacacacatgaaaacacacacatgaaaacacacacatgtaagta 240
           ||||||||||||||||||||||||||||||||||||||||              ||||||
Sbjct: 381 taaacacacatgaaaacacacacatgaaaacacacacatg--------------taagta 426

                                                                       
Query: 241 tgcacacacatgtaagcataccaacacacaaaaaattaaaaactatttaacatatataaa 300
           |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 427 tgcacacacatgtaagcataccaacacaaaaaaaattaaaaaccatttaacatatataaa 486

                                                                       
Query: 301 cctgagtattgtttcttgcattaaaaatgtgtgtgtatgtttgtgcatgtttgtgtgtgc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 cctgagtattgtttcttgcattaaaaatgtgtgtgtatgtttgtgcatgtttgtgtgtgc 546

                                      
Query: 361 ttgtgtatgtgtttgtattgttatgta 387
           |||||||||||||||||||||||||||
Sbjct: 547 ttgtgtatgtgtttgtattgttatgta 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)