BAC Information

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BAC

Clone NameMSMg01-134L21
Chromosome4 (Build37)
Map Location 23,415,696 - 23,416,036
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664911, 1700025O08Rik, LOC625462
Downstream geneLOC383998, LOC100040464, LOC623873, LOC664973
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-134L21.T7 (MSMg01no134_l21.b1)MSMg01-134L21.TJ (MSMg01no134_l21.g1)
ACCAG341383AG341384
length1,1931,154
length of high quality
(start - end)
334 (508 - 841)338 (472 - 809)
definitionCHROMAT_FILE: MSMg01no134_l21.b1 PHD_FILE: MSMg01no134_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:27 2005CHROMAT_FILE: MSMg01no134_l21.g1 PHD_FILE: MSMg01no134_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:50:27 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCAAGCANNNNNNNGGGCACTGGGCGCTATAXXXXXXXXXXXXXXXXXX
XXXXCGCGGAATTCTCACCTGAGGAATACCCATTGGAAGAGAAGCACTTG
AAAAAATGTTCAGCATCCTTCATTATCAGGGAAATGCAAATCAAAACAAC
CCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAATCCTTCA
GGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCA
TTGTTGGTGGGAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGC
GGTTCCTCAGAAAACTGGACATAGTACTACCGGAGGATCCAGCAATACCT
CTCCTGGGCATATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATG
CTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAG
AACCTAGATGTTTTTCATCACACCAATGGATACAGAAAATGTGGTACATA
AAACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAAT
TCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACA
CATTCACAAAGAAACTCACACAATATGTATTCACTGATAAGTGGATATTA
GCCCCAAACCTAGGATACCCAAGATATAAGATATAATTTGCTAAACACAT
GAAACTCAAGAAGAATGAAGACTGAAGTGTGGACACTATGCCCCTCCTTA
GATTTGGGAACAAAACACCCATGGAAGGAGTTACAGAGATGGAGTTTGGA
GCTGAGATGAAAGGATGGACCATGTAGAGACTGCCATATCCAGGGATCCA
CCCCATAATCAGCATCCAAACGCTGACACCATTGCATACACTAGCAAGAT
TTTATTGAAAGGACGCAGATGTAGCTGTCTCTTGGGAAATTATGCCCGGG
CCCCGCCAACACAGAAGGGGATGGTCCCCGCCCCCCTTAAGGGAGGATCC
TAAGGCTCCCCCTGGAGGAAATTATAAAAAGAATTCCACGGGGCCTTAAG
GGGTTCTTCCACCCCTTATGGTGGAGACAAATTTTTGTGTTTATCCAGAC
CCCCCGGACCTTTTGACCTCTATTTGCTTATTTATTAAAAAAGGGCCTAA
ACCCCCCCTCCTCTGAAAAGAAAGACCCTATGTTATTTCTTTA
NNCCATCTTANNNNAAATCAGGGNAGGCTGGGGXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCTTTAAAATGCTCCAAGATGC
TCCAAAACCAGAAAGTGTCCTTTTGAAGATTTAATAAATACCCCTGTGGA
AGATTTTGTATCTATCTTCATGTGATAGATAGAGGTTATAATCCAGGCAT
ATTAAGAATATATTTTAAAAATCTATTGCCTATATTAATAAAGTATTTTT
TAAACATAAATCACGAGTTCAGCCTTGGATCTCAACCCAATGATGCCTCA
TTATGAATATACATATATTTCAAAATAAAAACATCTCCAACCTAAAAGTC
TTCTAAGTTTACCTCTATAGCCTTCATTAATTTAGAGACAAATATTTTGA
CCCCATCACTAACCTTCACAACTCTGGTATATCATACTACAGAAGAGTGA
ATCATGGGTTTCTTTTACCAATAGGTGGAGACTTTACAAGAGAACAAACA
GAGTCCATCACAGTTGAGAAAATTCTAGTACATTCTGCTAAGGCTAGAAG
AGGGACCTGAAAATGTCTCTGTCTTCTGTCTGATTTACAGACACTGTGGA
GGCAGAGGTCAAAAGTACAGTAGGTATCTTGGCGAACCCTAGATGTGAAG
GGTGGGTCCACAATACTTTTCAAACTTCCTTATGTTGCCTATTTTCAAGC
AAATGTAGACCATATGAAATACTTTTGATGGTTGAGCTATGTTGGGCTTT
GGGTTGGATGTTGTTTAATCTATGAGGAGGAGTTAAACAGTAGAATTGAT
TTAACGTGAGAAAGGAAGAACATCAGAATCTTCGATTGGGAAGGCATGGA
AAGAATATCTTCCTAAATAAAAATAAGTTCCTCTTAACGAACAAAGGTCC
CCTTCTTTTTTTTTTTTCCCCATGGTTCCGTCCGGGGCTTCTTTTTGGGG
GCTAAATTTAAAAAAAGTTTTCTCTAATATCCTCTGTGTTCATAATTTTT
TTTTCCTCCCCGTTTTTTCTCAGATTTATTTATTTTTATTCCCTCTCATT
TTAATTCTTACCCTCTTTCCGTGTTTGGTCTATTTTCTTTCTGTATTTTC
TTTTTTTTTTTGTTTTTTGGTCTTATTTTTTATTTTTTTTTTTTGTTATT
TCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no134_l21.g1 MSMg01no134_l21.g1 CHROMAT_FILE:
MSMg01no134_l21.g1 PHD_FILE: MSMg01no134_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:50:27 2005
         (338 letters)



>mm_chr4_23415496_23416236
          Length = 741

 Score =  613 bits (317), Expect = e-180
 Identities = 334/341 (97%), Gaps = 3/341 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taggtggagactttacaagagaacaaacagagtccatcacagttgagaaaattctagtac 60
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 541 taggtggagactttacaagagaacaagcagagtccatcacagttgagaaaattctagtac 482

                                                                       
Query: 61  attctgctaaggctagaagagggacctgaaaatgtctctgtcttctgtctgatttacaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attctgctaaggctagaagagggacctgaaaatgtctctgtcttctgtctgatttacaga 422

                                                                       
Query: 121 cactgtggaggcagaggtcaaaagtacagtaggtatcttggcgaaccctagatgtgaagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 cactgtggaggcagaggtcaaaagtacagtaggtatcttggcgaaccctagatgtgaagg 362

                                                                       
Query: 181 gtgggtccacaatacttttcaaacttccttatgttgcctattttcaagcaaatgt---ag 237
           |||||||||||||||||||||||| | ||||||||||||||||||||||||||||   ||
Sbjct: 361 gtgggtccacaatacttttcaaacatacttatgttgcctattttcaagcaaatgtaggag 302

                                                                       
Query: 238 accatatgaaatacttttgatggttgagctatgttgggctttgggttggatgttgtttaa 297
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 301 accatatgaaatacttttgaaggttgagctatgttgggctttgggttggatgttgtttaa 242

                                                    
Query: 298 tctatgaggaggagttaaacagtagaattgatttaacgtga 338
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tctatgaggaggagttaaacagtagaattgatttaacgtga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 741
Length adjustment: 9
Effective length of query: 329
Effective length of database: 732
Effective search space:   240828
Effective search space used:   240828
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)