BAC Information

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BAC

Clone NameMSMg01-135E22
Chromosome4 (Build37)
Map Location 74,968,025 - 74,968,374
singlet/doubletsinglet
Overlap genenone
Upstream geneJmjd2c, LOC100040258, LOC100039814, LOC636847, 3110001D03Rik
Downstream geneLOC623529, LOC100039833, LOC100039884, LOC667845, Ptprd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135E22.T7 (MSMg01no135_e22.b1)MSMg01-135E22.TJ (MSMg01no135_e22.g1)
ACCAG341801AG341802
length710704
length of high quality
(start - end)		587 (75 - 661)338 (80 - 417)
definitionCHROMAT_FILE: MSMg01no135_e22.b1 PHD_FILE: MSMg01no135_e22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:24 2005CHROMAT_FILE: MSMg01no135_e22.g1 PHD_FILE: MSMg01no135_e22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGCTCAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAGAGGATCC
GCGGAATTCTCACTAATTGCACTCCAAGAACACATTAAAACAATCATCCG
TTGTGACCAAGTAGGTTTTATGCCAGGGATGCAGGGATGGATTAATATAC
GGAAATCCATCAATGTAATCCATTATATAATTAAACTCTAAGACAAAAAC
CACATGATCATCATCTTAAACGCAGAGAAAGCATTTGAGAAAATCCAACA
CCCATTCATGATAAAAGTCTTGGAAAGATCAGAAATTCAAGGCCCATACC
TAAACATGATAAAAGCAATCTACAGTAAACCAGTAGCCAACATCAAAATA
TATGTTGAGAAGCTTGAAGCAATTCCACCAAAATCAGGGACTAGACAAGG
CTGCCCACTTTCTCCCTACATATTTAATATTGTACTTGAAGTCCTAGGCA
GAGCAATTTGACAACAAAAGGAGATCAAGGAGATACAAATTAGAAAGGAA
GAAGTCAAAATATCACTTTTTGCAGATGATATGATAGTATATATGAGTGA
CCCTAAAAATTCCACTAGAGAACTCCTAAACCTTATAAAGAGCTTCAGTG
AAGTAGCTTGATATTAAATTAACTCAAACAAGTCAATGGCCTTTCTCTAC
ACAAAGAATAGATAGGCTGATAAAGATATTACGGAAACAACACCCTTCTT
AATAGTCACN

NNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGGCACTTGCTGGACTGGTT
CTTATCTGCAAAGAGGTAGGTTTGTGAAGCACTATCTTCCTCAGGTAGAA
GGTGTCATGGGTCTGGCGCTCCAGACCTGGTCAGAGTAGGGGAAACCCTG
ACAGAAAAAGGGAGTCTTTCATCTTTCACCAAGCTAGGAGGCCCTATCCA
GACATGGTAGACTTTGACCTTAACTAGGAGGATTTCTCACTACAGATTTA
CTAAAATATAAATTGTTGATGAGCAAGATAAAACTATCAAGAACCATTGC
TTTCTCTAAATGCTGCAACATTTCTTGGCTTCTATTTTCTATTATGTAAT
TATTACTGTGTTCAATAGGACACGTGCAAAAATGTTCCCTTTTTTNAAGA
ATAATATCTATTTTACTATTANNCAAACAAGGTATTCCACTGTTTTAGTC
CCTGCAGCTATGTGGAATTTATCCTGTTTCACGTTTGCAGAGGATTCGTG
TCATACACTAAGCTAACCTGGGTCCCATTTTACCTTGCCACAACTGTTTA
ACAAATTTGCCGGCCCGGATCAGGGTCATTGAAAAAAAAATTATTTGGTG
CCGAAATTTATGAAAAGGCACAAAATTCCCCCCTCCTGGAGAATATGGAA
AAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_e22.g1 MSMg01no135_e22.g1 CHROMAT_FILE:
MSMg01no135_e22.g1 PHD_FILE: MSMg01no135_e22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:24 2005
         (338 letters)



>mm_chr4_74967837_74968574
          Length = 738

 Score =  611 bits (316), Expect = e-179
 Identities = 336/350 (96%), Gaps = 12/350 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggcacttgctggactggttcttatctgcaaagagg------------taggtttgtga 48
           |||||||||||||||||||||||||||||||||||||            |||||||||||
Sbjct: 189 caggcacttgctggactggttcttatctgcaaagaggaaattgaacttgtaggtttgtga 248

                                                                       
Query: 49  agcactatcttcctcaggtagaaggtgtcatgggtctggcgctccagacctggtcagagt 108
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 249 agcactatcttcctcaggtagaaggtgtcatgggtctggctctccagacctggtcagagt 308

                                                                       
Query: 109 aggggaaaccctgacagaaaaagggagtctttcatctttcaccaagctaggaggccctat 168
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 aggggaaaccctgacagaaaaagggagtctttcatctttcaccaagctaggaggccctat 368

                                                                       
Query: 169 ccagacatggtagactttgaccttaactaggaggatttctcactacagatttactaaaat 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ccagacatggtagactttgaccttaactaggaggatttctcactacagatttactaaaat 428

                                                                       
Query: 229 ataaattgttgatgagcaagataaaactatcaagaaccattgctttctctaaatgctgca 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 ataaattgttgatgagcaagataaaactatcaagaaccattgctttctctaaatgctgca 488

                                                             
Query: 289 acatttcttggcttctattttctattatgtaattattactgtgttcaata 338
           ||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 489 acatttcttggcttctattttctattatgtaattattactgtgtttaata 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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