BAC Information

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BAC

Clone NameMSMg01-135I09
Chromosome4 (Build37)
Map Location 62,893,425 - 62,893,736
singlet/doubletsinglet
Overlap geneCol27a1
Upstream geneSlc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3, Zfp618, Ambp, Kif12
Downstream geneOrm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135I09.T7 (MSMg01no135_i09.b1)MSMg01-135I09.TJ (MSMg01no135_i09.g1)
ACCAG341960AG341961
length707707
length of high quality
(start - end)
620 (44 - 663)256 (62 - 317)
definitionCHROMAT_FILE: MSMg01no135_i09.b1 PHD_FILE: MSMg01no135_i09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:40 2005CHROMAT_FILE: MSMg01no135_i09.g1 PHD_FILE: MSMg01no135_i09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTCATXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAAAGAGGATCCGCGG
AATTCTGGGCTTCGGGAGACACAGCCAGGTCTGGAAAGAAACAGGGCCTG
AGTTAATTACATAACTAAAACCAACTGCTGGGCTTAGAGCTAAAAATATG
TAGCAGGCAGTTTCCTCCTCTGGTGCTTGCCTGGCCCTTGTCATGAGGAA
AGCTCAACCAGTCTGAGCTAGGATGTGAGTGCCATTGGTCCCAGCCAGGA
AGAGATAGACTTCCCTCTCAGAGGACCCTAGGCTCCCAGCATTTGGGAAG
ATCTTGGGCTGCAGTCCTGATATTGCTAGTCACGCCTTATCCCTGAATAA
GGATGCCCACTGTACTGGTTAGTTTTGTGTCAACTTGACACAGCTGGAGT
TATCACAGAGAAACCACCTTCAGTTGGGGAAATGCCTCCATGAGATCCAA
CTGTAAGGCATTTTCTCAATTAGTGATCAAGGGAGAAAGGCCCTTGTGGG
TGGGACCATCTCAGGGCTGGTAGTCTTGGAAAGCAGGCTGAGCATGCCAG
GTGAGGCAAGCCAGTAAAGAACATCCCTCCATGGCCTCTGCATCGGCTCC
TGCTTTCTGACCTGCTTGAGTTCCAGTCCTGACTTCCTTGGTGATGAACA
GCAGTATGGAAGTGTAAGCCGAATAAACCCTTTCCTTCCCAACTTGCTTC
TTGAGCA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXTTCCTCGCGGAATTCCCAGCATCACTCAGTCCCAGAAAC
TATCTGCAGCTGGCAAAACCACACACCTGCTAGAGCATGCGGCAAATCAT
AGTCAGCTGCTGTGGACAACTTGATGCAGCCCCTGGGATTAAAATGAAAA
CATACTCTTATGATACTTATGTAGTTTTTTATTGTTTGTTTGTTTGTTTT
TACAGAACCCAAAATCCAACCTTGTCACTACACAGAGTACCTCTTGCCCC
CGACAGGGTGGCCTGCAACCTATGAGGGCCTAATGATCAAGAAGGGACCT
GGGGTCTGTTCAGGGTGGGTTGTGGGACTGAAATTGAGAACATAGTGAAC
AAGCTGGGGAAGACACGCTGATATTCCTTCCTGTTCTATTTCTGAGCTTC
CAAACATTGGAGAGATTAGAACTCATCCAGGCCTTTGGCAGTCCCCTTTG
TGTGTGAAAAACTGTGATTCTTGGCCACCTTTCATTAATCCTTCATTGCT
CTCTCATGATCAGCTCAGGCTCTCACACCTAGTTCCCCGCAGTGATGGCA
AACCTGAGCTGGTTTTTGTAAACCCACGATTTGAATGCATTGTGTTTCTT
GCGCCCACACTGTTCCTCAGTCACACCCACCCCCTGAAACTATCCATCAC
TCCCGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_i09.b1 MSMg01no135_i09.b1 CHROMAT_FILE:
MSMg01no135_i09.b1 PHD_FILE: MSMg01no135_i09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:40 2005
         (620 letters)



>mm_chr4_62893220_62894239
          Length = 1020

 Score =  582 bits (301), Expect = e-170
 Identities = 310/313 (99%), Gaps = 2/313 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctgggcttc-gggagacacagccaggtctggaaagaaacagggcctgagttaatt 65
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattctgggc-tcagggagacacagccaggtctggaaagaaacagggcctgagttaatt 459

                                                                       
Query: 66  acataactaaaaccaactgctgggcttagagctaaaaatatgtagcaggcagtttcctcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 acataactaaaaccaactgctgggcttagagctaaaaatatgtagcaggcagtttcctcc 399

                                                                       
Query: 126 tctggtgcttgcctggcccttgtcatgaggaaagctcaaccagtctgagctaggatgtga 185
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 398 tctggtgcttgcctggcccttgtcatgaggaaagctcaaccagtctgagctaggatatga 339

                                                                       
Query: 186 gtgccattggtcccagccaggaagagatagacttccctctcagaggaccctaggctccca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtgccattggtcccagccaggaagagatagacttccctctcagaggaccctaggctccca 279

                                                                       
Query: 246 gcatttgggaagatcttgggctgcagtcctgatattgctagtcacgccttatccctgaat 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gcatttgggaagatcttgggctgcagtcctgatattgctagtcacgccttatccctgaat 219

                        
Query: 306 aaggatgcccact 318
           |||||||||||||
Sbjct: 218 aaggatgcccact 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 620
Length of database: 1020
Length adjustment: 10
Effective length of query: 610
Effective length of database: 1010
Effective search space:   616100
Effective search space used:   616100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)