BAC Information

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BAC

Clone NameMSMg01-135L15
Chromosome4 (Build37)
Map Location 88,533,270 - 88,533,919
singlet/doubletsinglet
Overlap genenone
Upstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1
Downstream geneLOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785, Dmrta1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-135L15.T7 (MSMg01no135_l15.b1)MSMg01-135L15.TJ (MSMg01no135_l15.g1)
ACCAG342113AG342114
length738730
length of high quality
(start - end)		527 (47 - 573)649 (64 - 712)
definitionCHROMAT_FILE: MSMg01no135_l15.b1 PHD_FILE: MSMg01no135_l15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:55 2005CHROMAT_FILE: MSMg01no135_l15.g1 PHD_FILE: MSMg01no135_l15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:51:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCGCGG
AATTCAAGAAGTTAGCTCTTTTGGTCCATGCAGAGACTCGTCGGGTCCTT
GGGAACAAACCTGCCTTGGAAGCGAGTACTAATCACGACCATGCACCACG
CAAAGTCAAGCCCTCTCCCCCCACCCCACCCCAACCCCCTAAACAGGAGT
CACATAAGACATCTTTCTCAGGATTCCAGAAGAGAATGAAGGACGTTGGA
TTAGCTATTCTGGCTGCGGGGTAGTGTGGGAATTGTTGGCAATAAAAACA
AAACCTCTCCAAAACCCTAGCTACCTGGTCAAAGTAATACGTGAAGGAAG
CTGCTGAAAACGTGACCGCATTCGAATTCAGAATGGGAGAGTAAACTCGT
GCTGACTTACAGAGGGAGGGTTGATGTCAGAAGGAGCAGAGACAGGCACA
CTTGACAGAAGCCCTCCCTGTGGGGGGCTGAGCAAGAGGCCATCTACCCG
AAAATGCCCTTTTGGTGAGGGTGACTTTTGAGGGAAGGAAACAGGGAGGA
GGGGCCTGGCCGGGAGGAGGAGCGCCAACTTACTGACTGAGAGGTCCAAC
TGATACCTGCTCAGCAGAGCTCCTGAGAGGAGAGGGGCAAGACCATACTG
TCTGTCCTCTCTCTGTAACTGCCTGCCTGTTGGGGCCCAGATCTCCTCTC
TTCTTAATGCGCTTACTAAAACTGCAAGGCACCGCAGG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTGGGAAAGGAGAGAGAATCAGATATTATGTGTTATT
AAGATCACTTCCTACTCTGAAATTCTATGATAGATGAGTTAATATAGATT
CTATGATAGATGAGTTAATATAGATTAATATTTGCAGGTTCGTGCTGAGC
AAATGGACTAGGGATGTACTAATAACTACTGGGAAAATGCCATGTTTAAA
ATAATTACTAAGGCCAAATCAAAGTGAGGCAGAAATAGCTTTGAGTGGTG
CAGTAGATATGACACATATGTGAATATGGTTGGAAGTGCAAGATCTGAGC
ATGGGCAGAGAAGTCAAGATATATTTAGCTACAGTAACTCCCAAAAGGAG
ATGAGATAACAGTGAGTATCTGTAACAGGTAAATATATATCAGTGCTGTT
CAGGCAAGAAAGCAAAAATGTTAACTGGAGAGGATCTTAATATGTGTTAA
AGAGATGAGCAATCATTCTAGAACCAATTTATCTTGTCTATTAATATATC
AATTACCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGG
CAATCTACAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACT
CTTCTCAAGGATAAAAGACCTCTGGTGGAATCACCATGCCTGACCTAAAG
CTGTACTACAGAGCAATTGTGATAAAAACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no135_l15.g1 MSMg01no135_l15.g1 CHROMAT_FILE:
MSMg01no135_l15.g1 PHD_FILE: MSMg01no135_l15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:51:55 2005
         (649 letters)



>mm_chr4_88533229_88534277
          Length = 1049

 Score = 1181 bits (611), Expect = 0.0
 Identities = 641/651 (98%), Gaps = 3/651 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgggaaaggagagagaatcag-atattatgtgttattaagatcacttcctactctgaaa 59
           |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 691 ttgggaaaggagagagaatc-gtatattatgtgttattaagatcacttcctactctgaaa 633

                                                                       
Query: 60  ttctatgatagatgagttaatatagattctatgatagatgagttaatatagattaatatt 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttctatgatagatgagttaatatagattctatgatagatgagttaatatagattaatatt 573

                                                                       
Query: 120 tgcaggttcgtgctgagcaaatggactagggatgtactaataactactgggaaaatgcca 179
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||
Sbjct: 572 tgcaggttcgtgctgagcaagtggactagggatgtactaataactactgggaaaacgcca 513

                                                                       
Query: 180 tgtttaaaataattactaaggccaaatcaaagtgaggcagaaatagctttgagtggtgca 239
           ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 512 tgtttaaaataattactaaggccaaatcaaagtgaggcacagatagctttgagtggtgca 453

                                                                       
Query: 240 gtagatatgacacatatgtgaatatggttggaagtgcaagatctgagcatgggcagagaa 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gtagatatgacacatatgtgaatatggttggaagtgcaagatctgagcatgggcagagaa 393

                                                                       
Query: 300 gtcaagatatatttagctacagtaactcccaaaaggagatgagataacagtgagtatctg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gtcaagatatatttagctacagtaactcccaaaaggagatgagataacagtgagtatctg 333

                                                                       
Query: 360 taacaggtaaatatatatcagtgctgttcaggcaagaaagcaaaaatgttaactggagag 419
           |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct: 332 taacaggtaaatatatatcaatgctgttcaagcaagaaagcaaaaatgttaactggagag 273

                                                                       
Query: 420 gatcttaatatgtgttaaagagatgagcaatcattctagaaccaatttatcttgtctatt 479
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 272 gatcttaatatgtgttaaagagatgagcaatcattctggaaccaatttatcttgtctatt 213

                                                                       
Query: 480 aatatatcaattacccccatcaaaattccaactcaattcttcaacgaattagaaagggca 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 aatatatcaattacccccatcaaaattccaactcaattcttcaacgaattagaaagggca 153

                                                                       
Query: 540 atctacaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggat 599
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 atctacaaattcatctggaataacaaaaaacctaggatagcaaaaactcttctcaaggat 93

                                                              
Query: 600 aaaag-acctctggtggaatcaccatgcctgacctaaagctgtactacaga 649
           ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  aaaagaacctctggtggaatcaccatgcctgacctaaagctgtactacaga 42


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 649
Length of database: 1049
Length adjustment: 10
Effective length of query: 639
Effective length of database: 1039
Effective search space:   663921
Effective search space used:   663921
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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