TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAAATGCCACCTTTTCACTGAAGCCTTTCCTGACCTCTTTGCATGAA
CACTGAACACTTCTGTCAGTATAAAGACCATTGTGACAGCAGTCATTCTC
TGGAGGGCTATCAAGCACCTTTGACATGCCTGACTTCTCTGGGAACATGT
GATATGTATGAGAGTCAATTACACAGACCACTGCATTCAGGAAGCTTATC
TTCCATCTGCATGTGTGCATATGAGTATGTACCTGTGTTATATAACAAAG
TTATATGTGACAATTAAATTCTAAAGTATATGAAAGATACAAGTTCTGAT
AAAAAAAATAAGCAAATAAAAGAAGAAAAAAGAATTCAGAGTTTTGAGAT
GAGGGACTTAGTTTTAATATAAAACACCATAGAGTGAATAGTTTATTGAA
ATTGTGAGATTGGAATAAAGGCTTAGGAGAAATGAATTATCATCCAGAAA
AAATCAAAGAAAGAATTTCCTGAGCAGAGAGAAGTCCCTGAAAGATTCAA
TTCAGGAACACACCTGGGTAATTCAGCACACAGACTAGGATAGTCACTGG
AGTTAGCAGGGGATGGGTAAGGTGGTAGTCTGGAGCCAAGTCACACATGA
CCTGACAGATAAGGGTCAGGATTTTGGCTTTCATTCCCTGTGCCATGGAA
TGTGCATGATCTTANGCAAAAG

GATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCA
CCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAA
CAACCCTGAGATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAAT
TCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCT
CCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCT
GGCGGTTCCTCAGAAAATTGGACATAGTACTGCCGGAGGATCCAGCAATA
CCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGACAC
ATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGTTGGA
AAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGCTAC
ATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAA
ATTCCTAGGCAAATGGTTGGACCTGGAGGGCATCATCCTGAGTGAGGTAA
CACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATAT
TAGCCCAAAACCTAGGATACCCAAGATATAAGATACAATTTCCTAAACAC
ATGAA

Query= MSMg01no135_n05.b1 MSMg01no135_n05.b1 CHROMAT_FILE:
MSMg01no135_n05.b1 PHD_FILE: MSMg01no135_n05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:02 2005
         (630 letters)



>mm_chr4_66056945_66057976
          Length = 1032

 Score = 1172 bits (606), Expect = 0.0
 Identities = 622/628 (99%), Gaps = 2/628 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcaaatgccaccttttcactgaagcctttcctgacctctttgcatgaacactgaac 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 872 gaattcaaatgccaacttttcactgaagcctttcctgacctctttgcatgaacactgaac 813

                                                                       
Query: 65  acttctgtcagtataaagaccattgtgacagcagtcattctctggagggctatcaagcac 124
           ||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||
Sbjct: 812 acttctgtcagtataaagaccatcgtgacagcagtcattccctggagggctatcaagcac 753

                                                                       
Query: 125 ctttgacatgcctgacttctctgggaacatgtgatatgtatgagagtcaattacacagac 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 752 ctttgacatgcctgacttctctgggaacatgtgatatgtatgagagtcaattatacagac 693

                                                                       
Query: 185 cactgcattcaggaagcttatcttccatctgcatgtgtgcatatgagtatgtacctgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 cactgcattcaggaagcttatcttccatctgcatgtgtgcatatgagtatgtacctgtgt 633

                                                                       
Query: 245 tatataacaaagttatatgtgacaattaaattctaaagtatatgaaagatacaagttctg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 tatataacaaagttatatgtgacaattaaattctaaagtatatgaaagatacaagttctg 573

                                                                       
Query: 305 ataaaaaaaa--taagcaaataaaagaagaaaaaagaattcagagttttgagatgaggga 362
           ||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 ataaaaaaaaagtaagcaaataaaagaagaaaaaagaattcagagttttgagatgaggga 513

                                                                       
Query: 363 cttagttttaatataaaacaccatagagtgaatagtttattgaaattgtgagattggaat 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 512 cttagttttaatataaaacaccatagagtgaatagtttattgaaattgtgagattggaat 453

                                                                       
Query: 423 aaaggcttaggagaaatgaattatcatccagaaaaaatcaaagaaagaatttcctgagca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 aaaggcttaggagaaatgaattatcatccagaaaaaatcaaagaaagaatttcctgagca 393

                                                                       
Query: 483 gagagaagtccctgaaagattcaattcaggaacacacctgggtaattcagcacacagact 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 gagagaagtccctgaaagattcaattcaggaacacacctgggtaattcagcacacagact 333

                                                                       
Query: 543 aggatagtcactggagttagcaggggatgggtaaggtggtagtctggagccaagtcacac 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 aggatagtcactggagttagcaggggatgggtaaggtggtagtctggagccaagtcacac 273

                                       
Query: 603 atgacctgacagataagggtcaggattt 630
           ||||||||||||||||||||||||||||
Sbjct: 272 atgacctgacagataagggtcaggattt 245


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 630
Length of database: 1032
Length adjustment: 10
Effective length of query: 620
Effective length of database: 1022
Effective search space:   633640
Effective search space used:   633640
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)