Query= MSMg01no136_e23.b1 MSMg01no136_e23.b1 CHROMAT_FILE:
MSMg01no136_e23.b1 PHD_FILE: MSMg01no136_e23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:39 2005
(628 letters)
>mm_chr4_63837509_63838533
Length = 1025
Score = 1013 bits (524), Expect = 0.0
Identities = 596/626 (95%), Gaps = 14/626 (2%)
Strand = Plus / Plus
Query: 5 gaattctccccacttactgtggcactgacccgatcctcaatggtcatcatgtgtcctacc 64
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 205 gaattctccccacttactgtggcactgaccctatcctcaatggtcatcatgtgtcctacc 264
Query: 65 aggctttcttgctcctagtgacttcctgactattcctgggggagcaactgcactgagagg 124
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 265 aggctttcttgctcctagtgacttcctgactattccttggggagcaactgcactgagagg 324
Query: 125 catgttgccaccttctgttctgctccataaagagattctcagctaatc--agagactgta 182
|||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct: 325 catgatgccaccttctgttctgctccataaagagattcccagctaatcagagagactgta 384
Query: 183 aattcccctaaagccacatctatcctcttcaatttcttatatttggtttattcattgttc 242
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 aattcccctaaagccacatctatcctcttcaacttcttatatttggtttattcattgttc 444
Query: 243 agttgctcagctgcccccattttcccagtgtatcctgagccttcaaggatcctagtgtcc 302
||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||
Sbjct: 445 agttgctcagctgcccccattttccaagtgtatcctaagccttcaaggatcctggtgtcc 504
Query: 303 attagaatagagtttctagatattggtccagaaactggtctatgagtgaaataataccag 362
|||||||||||| | | | |||||||||||||||| ||||||||||||||||||||||
Sbjct: 505 attagaatagagatgc---acattggtccagaaactgctctatgagtgaaataataccag 561
Query: 363 ggtcctattatgatcctttgggattcaaagactcagactttcttttcaccttgtcatctc 422
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 ggtactattatgatcctttgggattcaaagactcagactttcttttcaccttgtcatctc 621
Query: 423 ctgcactgtgctcatgtactttatattctccaccttgtaacttccccacttgttactctt 482
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 622 ctgcactgtgcacatgtactttatattcttcaccttgtaacttccccacttgttactctt 681
Query: 483 atcccacaccattcatctacagctgggtaagaatactttttactttattttcctccactc 542
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 682 atcccacaccattcatctacagctgggtaagaatacattttactttattttcctccactc 741
Query: 543 ttgtacatagaaggtatggagaagagatgtactgacaaacccccccctcccccccgcccc 602
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
Sbjct: 742 ttgtacatagaaggtatggagaagagatgtactgacaa--ccccccctccccc--g---- 793
Query: 603 aaagtttgtatgtataagactgtaac 628
|||||||||||||||||||||||||
Sbjct: 794 -aagtttgtatgtataagactgtaac 818
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1025
Length adjustment: 10
Effective length of query: 618
Effective length of database: 1015
Effective search space: 627270
Effective search space used: 627270
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_e23.g1 MSMg01no136_e23.g1 CHROMAT_FILE:
MSMg01no136_e23.g1 PHD_FILE: MSMg01no136_e23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:39 2005
(600 letters)
>mm_chr4_63939897_63940896
Length = 1000
Score = 1137 bits (588), Expect = 0.0
Identities = 597/600 (99%)
Strand = Plus / Minus
Query: 1 tctgactctgttgcatgccattggatcccttcctctacttggactgcctagttgggcctc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 772 tctgactctgttgcatgccattggatcccttcctctacttggactgcctagttgggcctc 713
Query: 61 agtgagagaagaggttctttgtcctacagggactagatgtcccaggttggggtggtaccc 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 712 agtgagagaagaggttctttgtcctacagagactagatgtcccaggttggggtggtaccc 653
Query: 121 aagggatcttcccattctcttagaagaaggtgggctaatggggagagagacttataatgg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 652 aagggatcttcccattctcttagaagaaggtgggctaatggggagagagacttataatgg 593
Query: 181 caggactaggaagagaggaagggtgtgcaattgggatgtaatatgaataaaataaaaata 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 592 caggactaggaagagaggaagggtgtacaattgggatgtaatatgaataaaataaaaata 533
Query: 241 gattatggaatgaaggaaaacatcataaaatctatttattaacacatttggtatttgtta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gattatggaatgaaggaaaacatcataaaatctatttattaacacatttggtatttgtta 473
Query: 301 ttaaaaagtacaaaaaagccaattctttaaaaaaaataattcagttactcattttgtgct 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 ttaaaaagtacaaaaaagccaattctttaaaaaaaataattcagttactcattttgtgct 413
Query: 361 gacccccaaccacagaattatttttgttgctacttcataactgtaattttactactatta 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 gacccccaaccacagaattatttttgttgctacttcataactgtaattttactactatta 353
Query: 421 taaattgtaagataaatatacactttgcaggcttttggatatgtggccctcaaagaagtc 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 taaattgtaaggtaaatatacactttgcaggcttttggatatgtggccctcaaagaagtc 293
Query: 481 atgatctgatggttgagaagtgctaccctcagaaaggataaatgtagtcctgatgaggcc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 atgatctgatggttgagaagtgctaccctcagaaaggataaatgtagtcctgatgaggcc 233
Query: 541 ccagtagaaaatcttgtctgccctctggtttctccttctcaccaaatgatatcttcctct 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 ccagtagaaaatcttgtctgccctctggtttctccttctcaccaaatgatatcttcctct 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
