Query= MSMg01no136_f23.b1 MSMg01no136_f23.b1 CHROMAT_FILE:
MSMg01no136_f23.b1 PHD_FILE: MSMg01no136_f23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:44 2005
(599 letters)
>mm_chr4_127099406_127100404
Length = 999
Score = 1093 bits (565), Expect = 0.0
Identities = 589/597 (98%)
Strand = Plus / Plus
Query: 3 ggaattcaatctgaccgatgtcttagaaggggaaactcagagcacagagtcatcagggtg 62
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 203 ggaattcaatctgactgatgtcttagaaggggaaactcagagcacagagccatcagggtg 262
Query: 63 cttgtgtacagaggcatggccctgtgaagaggcagcaagagggttgccagctgcaggtga 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cttgtgtacagaggcatggccctgtgaagaggcagcaagagggttgccagctgcaggtga 322
Query: 123 aggagcgaactcagagatcacccacaacgggcacggtgggtaccaccatcttgcatctcc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 aggagcgaactcagagatcacccacaacgggcacggtgggtaccaccatcttgcatctcc 382
Query: 183 atcctgcagaactatgtagacgtaggcaatcacgtgagccacctgggctttagcctttga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 atcctgcagaactatgtagacgtaggcaatcacgtgagccacctgggctttagcctttga 442
Query: 243 ctatggcagcctgagcaggcccttcctggcctgtcccatgccactttccatcctggccat 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctatggcagcctgagcaggcccttcctggcctgtcccatgccactttccatcctggccat 502
Query: 303 ctctaccccacctatttgtactcctgccatactgagttctttacttccttcttgtctttt 362
|||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 503 ctctgccccacctatttgtactcctgccatactgagttttttacttccttcttgtcttct 562
Query: 363 gtcttccctctttctgattcttctgcctagagccctctccctgaggcacactcactctgt 422
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gtcttctctctttctgattcttctgcctagagccctctccctgaggcacactcactctgc 622
Query: 423 tggttaatcgggacctctgtatccttcagctttcagatcaaatgcaccgttccctgtgag 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tggttaatcgggacctctgtatccttcagctttcagatcaaatgcaccgttccctgtgag 682
Query: 483 aaaggctttctgtgtcttttgcacactgccccttctccagcctccacactagactggttc 542
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aaaggctttctgtgccttttgcacactgccccttctccagcctccacactagactggttc 742
Query: 543 tccatgcaaatgttgtcttaggagggctctggggtggtagatcctaggacagagaat 599
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 tccatgcaaatgttgtcttaggagggctctggggtggtagatcctaggacagagaat 799
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 599
Length of database: 999
Length adjustment: 10
Effective length of query: 589
Effective length of database: 989
Effective search space: 582521
Effective search space used: 582521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_f23.g1 MSMg01no136_f23.g1 CHROMAT_FILE:
MSMg01no136_f23.g1 PHD_FILE: MSMg01no136_f23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:44 2005
(617 letters)
>mm_chr4_127267837_127268852
Length = 1016
Score = 1077 bits (557), Expect = 0.0
Identities = 602/617 (97%), Gaps = 1/617 (0%)
Strand = Plus / Minus
Query: 1 cactggacttcagacttcatctgagttatcagccagaacagaatagcaaccccatacccc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 cactggacttcagacttcatctgagttatcagccagaacagaatagcaaccccatacccc 757
Query: 61 caccccaggagtctgcacactctgaatggagtgtgttcatcatgatgttcctggcacaag 120
| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 756 c-ccccaggagtctgcacactccgaatggagtgtgttcatcatgatgttcatggcacaag 698
Query: 121 gcctctggctgaggtcagcagagtcaacaccacggtggttcagtgagacccagaggtgaa 180
|||||||||||||||| ||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 697 gcctctggctgaggtcggcagagtcaacacaacagtggttcagtgagacccagaggtgaa 638
Query: 181 gtttctagaaagacaggagtagaaatgaggagatgcgtataactcaacccagggtgaatg 240
||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 637 gttcctagaaagacaggagtagaaatgaggagatgcgtataactcaacccagggtggatg 578
Query: 241 tggtcatcttagaagcccagagacactgtgtgtctttcgccatgcagaggtgtgttgcag 300
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tgggcatcttagaagcccagagacactgtgtgtctttcgccatgcagaggtgtgttgcag 518
Query: 301 aatggcatttggatgctgtttgtacctggtttaaatttccactcctttgctttcagaatt 360
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 517 aatggcatttggatgctgtttgtacctggtttaaatttcaactcctttgctttcagaatt 458
Query: 361 ggtaagcttgggatgataatgtcaacctcatagagtgggtatgagaatttccatttttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggtaagcttgggatgataatgtcaacctcatagagtgggtatgagaatttccatttttga 398
Query: 421 aaagtctgtattttattcttaggtttgaaatacaaagcttgcattccctgtatttttgct 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 397 aaagtctgtattttattcttaggtttgaaatacaaagcttgtgttccctgtatttttgct 338
Query: 481 gctaacatagttccaacctcaaccacaaggcacccaattgtctcctgttttctttccaca 540
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gctaacatagttccaaccccaaccacaaggcacccaattgtctcctgttttctttccaca 278
Query: 541 cagtccccaccctgcagttccagccacatcttggatgttccaatcttgaggcttgggagc 600
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 cggtccccaacctgcagttccagccacatcttggatgttccaatcttgaggcttgggagc 218
Query: 601 aactagctttccttaga 617
|||||||||||||||||
Sbjct: 217 aactagctttccttaga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 617
Length of database: 1016
Length adjustment: 10
Effective length of query: 607
Effective length of database: 1006
Effective search space: 610642
Effective search space used: 610642
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
