Query= MSMg01no136_g09.b1 MSMg01no136_g09.b1 CHROMAT_FILE:
MSMg01no136_g09.b1 PHD_FILE: MSMg01no136_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:46 2005
(161 letters)
>mm_chr4_8992900_8993460
Length = 561
Score = 284 bits (147), Expect = 1e-81
Identities = 153/155 (98%)
Strand = Plus / Minus
Query: 4 gaattcgtgccctcacctgtacatctgttcttgatattagtaattagtcacattatactg 63
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 gaattcgtgccctcatctgtacatctgttcttgatattagtaattagtcacattatactg 299
Query: 64 actagtagaacccatggtacataacaacaaatcaaatcagatagttccctgacacatgat 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 actagtagaacccatggtacataacaacaaatcaaatcagatagttccctgacacatgat 239
Query: 124 ttactttgtacagctttggtgacccacagtcaaca 158
|||||| ||||||||||||||||||||||||||||
Sbjct: 238 ttacttcgtacagctttggtgacccacagtcaaca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 161
Length of database: 561
Length adjustment: 8
Effective length of query: 153
Effective length of database: 553
Effective search space: 84609
Effective search space used: 84609
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no136_g09.g1 MSMg01no136_g09.g1 CHROMAT_FILE:
MSMg01no136_g09.g1 PHD_FILE: MSMg01no136_g09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:52:46 2005
(445 letters)
>mm_chr4_8807732_8808575
Length = 844
Score = 791 bits (409), Expect = 0.0
Identities = 436/445 (97%), Gaps = 1/445 (0%)
Strand = Plus / Plus
Query: 1 cttaacatttgtatgcaggaatggatctgtaagaacaacattgatgtgtgcatatagtta 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttaacatttgtatgcaggaatggatctgtaagaacaacattgatgtgtgcatatagtta 260
Query: 61 ttagtagaggtataaaatggtgagtcccccaaaaggcttgtgtgtttcagacgtggttgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttagtagaggtataaaatggtgagtcccccaaaaggcttgtgtgtttcagacgtggttgc 320
Query: 121 agtctgtcgtactagtaaggactgattgactcagaggttgaagcccttccttagtctatt 180
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 321 agtctgtcgtactagtaaggactgattgactcagaggttgaagccctgccttagtctatt 380
Query: 181 gagggctttattggagaatgggatatccaggggtggggccttgttgtagaacatagttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagggctttattggagaatgggatatccaggggtggggccttgttgtagaacatagttcc 440
Query: 241 cctgcttctattgttcctcagccctgcttcctgactgccccgagaacagcattttccctc 300
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 441 cctgcttctattgttcctcagccctgcttcccgactgccccgagaacagcattttccctc 500
Query: 301 ttctaaatccttgtgaccatgagactctgcctcaccttccaccccacaaatcactgtgca 360
||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct: 501 ttctaaatccttgtgaccatgagactctgcctcaccttccagct-ataaatcactgtgca 559
Query: 361 ggttgaccatggactgaaacctcagaagccttgaggccttcaacgtgaccttgagatcgc 420
|||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||
Sbjct: 560 ggttgaccatggactgaagcctcagaagccttgagaccttcaacgtgaccttgagattgc 619
Query: 421 ttatctcgggcgtttgttgagttgg 445
|||||||||||||||||||||||||
Sbjct: 620 ttatctcgggcgtttgttgagttgg 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 844
Length adjustment: 10
Effective length of query: 435
Effective length of database: 834
Effective search space: 362790
Effective search space used: 362790
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
