Query= MSMg01no136_o04.b1 MSMg01no136_o04.b1 CHROMAT_FILE:
MSMg01no136_o04.b1 PHD_FILE: MSMg01no136_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:24 2005
(482 letters)
>mm_chr4_67806795_67807675
Length = 881
Score = 855 bits (442), Expect = 0.0
Identities = 469/478 (98%), Gaps = 1/478 (0%)
Strand = Plus / Plus
Query: 5 gaattcatggttataccttccatcattttttttctcaagagagtgcccttccactttgct 64
||||||||||||||| |||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcatggttataaattccatca-tttttttctcaagagaatgcccttccactttgct 263
Query: 65 gtgctagaagcatcaagtagatatagcgtgaaggcacagaaaatggtggatagaagaaag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtgctagaagcatcaagtagatatagcgtgaaggcacagaaaatggtggatagaagaaag 323
Query: 125 aaaaacagttggaaatatactcctcagtaaatttaatgccctgggattagaggtctgagc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aaaaacagttggaaatatactcctcagtaaatttaatgccctgggattagaggtctgagc 383
Query: 185 atgtgtgtctgcttatttaaggctctacagctacagatcataaagtgcaaataacaacat 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atgtgtgtctgcttatttaaggctctacagctacagatcataaagtgcaaataacaacat 443
Query: 245 ttattcactattctataaacatgatgagagctggtctaattgaacttcatcaacagatat 304
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 444 ttattcactattctataaacattatgagagctggtctaattgaacttcatcaacagatat 503
Query: 305 aagagcttttgcccaggcatggtggtacatgcatataatcccagcactcaggaggctgag 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aagagcttttgcccaggcatggtggtacatgcatataatcccagcactcaggaggctgag 563
Query: 365 aaaagacagcgcctacctagtgagaactaagccagtcatagctgtgtaacaagaccatgt 424
||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 aaaagacagtggctacctagtgagaactaagccagtcatagctgtgtaacaagaccatgt 623
Query: 425 gtcaaaaattagaggaactacatgaagaaatgcatacatggatttcataaaaatacct 482
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 624 gtcaaaaattagaggaactacatgaagaaatacatacatggatttcataaaattacct 681
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 881
Length adjustment: 10
Effective length of query: 472
Effective length of database: 871
Effective search space: 411112
Effective search space used: 411112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_o04.g1 MSMg01no136_o04.g1 CHROMAT_FILE:
MSMg01no136_o04.g1 PHD_FILE: MSMg01no136_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:24 2005
(600 letters)
>mm_chr4_67977816_67978815
Length = 1000
Score = 1127 bits (583), Expect = 0.0
Identities = 595/599 (99%), Gaps = 2/599 (0%)
Strand = Plus / Minus
Query: 1 ttctttctcacctgcaggttcactgtgatctcacccttgtcacccatgggatgaattatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 ttctttctcacctgcaggttcactgtgatctcacccttgtcacccatgggatgaattatc 739
Query: 61 cagactaactaattttacagccagtaaattacagatatagtcattgaatgtgcgcctcat 120
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cagactaactaatttcacagccagtaaattacagatatagtcattgaatgtgcgcctcat 679
Query: 121 tagaggaagttaatttaagtagacaatcaacaaaatatagatggggtgtaaaaatccagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tagaggaagttaatttaagtagacaatcaacaaaatatagatggggtgtaaaaatccagt 619
Query: 181 ttgagtagatttctctctatctcgatcacacaatgaattcacaaccgcaacatctgccgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 ttgagtagatttctctctatctcgatcacacaatgaattcacaaccgcaacatctgccgc 559
Query: 241 taccaaagaaaacactttacacacagaaaagacataaagaaaagaacttgactcactgca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 558 taccaaagaaaacactttacacacagaaaagacataaagaaaagaacttgactcactgca 499
Query: 301 attttctctgatgaatgttgaatttccaattagtattttaattactccagtcagaacctc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 attttctctgatgaatgttgaatttccaattagtattttaattactccagtcagaacctc 439
Query: 361 agctgtcttcagggaaaaaaaaaa-gaaaaagaaaaatcttcaacattgtttttcatttt 419
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 438 agctgtcttcagggaaaaaaaaaaagaaaaagaaaaatcttcaacattgtttttcatttt 379
Query: 420 aattctgaggactaacaactttcctagctttgaagcatagacaaacaagtttgctcttac 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 aattctgaggactaacaactttcctagctttgaagcatagacaaacaagtttgctcttac 319
Query: 480 ttaatgtaaactttctgatcaagtgttcaataaatgttttcactattacataggaattac 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ttaatgtaaactttctgatcaagtgttcaataaatgttttcactattacataggaattac 259
Query: 540 tttcaatgttatttttaaaatcctatattccagtgaacagttccccattctatactata 598
|| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttacaatgttatttttaaaatc-tatattccagtgaacagttccccattctatactata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 600
Length of database: 1000
Length adjustment: 10
Effective length of query: 590
Effective length of database: 990
Effective search space: 584100
Effective search space used: 584100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
