Query= MSMg01no136_o24.b1 MSMg01no136_o24.b1 CHROMAT_FILE:
MSMg01no136_o24.b1 PHD_FILE: MSMg01no136_o24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:28 2005
(645 letters)
>mm_chr4_85492276_85493320
Length = 1045
Score = 1180 bits (610), Expect = 0.0
Identities = 634/642 (98%)
Strand = Plus / Plus
Query: 4 ggaattctaaatatatgcccattgtgtatattacagtgtgtctataatataacctgaata 63
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 204 ggaattctaaatatatgcccattgtgtatattccagtgtgtctataatataacctgaata 263
Query: 64 taggagacaaagaaagttagatatgtgatcttttctaatttaacattttctcagtggtaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 taggagacaaagaaagttagatatgtgatcttttctaatttaacattttctcagtggtaa 323
Query: 124 ttgacatttgttgtatgaagcagtggtctatgggttgaggtcatataatatgcccaagaa 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttgacatttgttgtatgaagcagtggtctatgggttgaggtcatataatatgcccaagaa 383
Query: 184 tatgggcacttttgcatatagtttatccatacattgctggctataatataaactccttaa 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tatgggcacttttgcatatagtttatccatacattgctggctataatataaactccttaa 443
Query: 244 aggaagtgattcactttctctcactcctagaccttgcatataatctctatgtcataaatt 303
||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct: 444 aggaagtgattcactttctttcactcctagaccttgcatgtaatctctatgtcataaatt 503
Query: 304 cccaataaatatgtgccccgtgaaagaataaaactctaggatccctctgcatcattctct 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 cccaataaatatgtgccccgtgaaagaataaaactctaggatccctctgcatcattctct 563
Query: 364 tcagactttctttgcttaacattctacaaattaattaatttataacccaaatgcttcccc 423
|||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct: 564 tcagactttctttgtttaacattctactaattaattagtttataacccaaatgcttcccc 623
Query: 424 ctcacccctcaccgagcccctcccccacccctcatcccccatccccatccccttctcctc 483
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 ctcacccctcacagagcccctcccccacccctcatcccccatccccatccccttctcctc 683
Query: 484 tgagagggtgtcccctatgtatcctcccaccctggtgcatcaagtctctgcaggattagg 543
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 tgagagggtgccccctatgtatcctcccaccctggtgcatcaagtctctgcaggattagg 743
Query: 544 agtatcctctcccactgaggccagacatggcagccttctgctacatatgcacttggggcc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 agtatcctctcccactgaggccagacatggcagccttctgctacatatgcacttggggcc 803
Query: 604 ttgagccagcccatgtattctctttagttggtgtctcagttt 645
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgagccagcccatgtattctctttagttggtgtctcagttt 845
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no136_o24.g1 MSMg01no136_o24.g1 CHROMAT_FILE:
MSMg01no136_o24.g1 PHD_FILE: MSMg01no136_o24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:53:28 2005
(616 letters)
>mm_chr4_85668381_85669396
Length = 1016
Score = 1137 bits (588), Expect = 0.0
Identities = 612/628 (97%), Gaps = 13/628 (2%)
Strand = Plus / Minus
Query: 1 tttctcttccgatgccagtccagggtgagtttcaaagatcttcctttttatccccaaaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 tttctcttccgatgccagtccagggtgagtttcaaagatcttcctttttatccccaaaga 619
Query: 61 gggaaggagtctgaaatcctgtcttgttttaagactaattagaaagtaagagtggatcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 618 gggaaggagtctgaaatcctgtcttgttttaagactaattagaaagtaagagtggatcac 559
Query: 121 agtcttgtgactgaaagctaatatttaccaactctcat-------------gtatgaatt 167
|||||||||||||||||||||||||||||||||||||| |||| ||||
Sbjct: 558 agtcttgtgactgaaagctaatatttaccaactctcatgaatctcccgcaagtataaatt 499
Query: 168 tccccatagagactcataatttccccatagaagatgaagcaaatgggtatttttctcctt 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 498 tccccatagagactcataatttccccatagaagatgaagcaaatgggtatttttctcctt 439
Query: 228 ttataaaaattgtgatttttgactctaagttggtgtacccacaattattatcaacaacat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 ttataaaaattgtgatttttgactctaagttggtgtacccacaattattatcaacaacat 379
Query: 288 gtagttctagaatattctcatcacccacctattccctcttcccactgctcttagttcctt 347
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 378 gtagttctagaatattctcatcacccacctattccctcttcccactgctcttagtttctt 319
Query: 348 atacttccataggattaagtgttctggacatcaaatataaatagaatcaattatggcctt 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 atacttccataggattaagtgttctggacatcaaatataaatagaatcaattatggcctt 259
Query: 408 tagtgtcttacatcttttatttatcatgttttggggttcatctatggtataccataatca 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 tagtgtcttacatcttttatttatcatgttttggggttcatctatggtataccataatca 199
Query: 468 gcacactttttatgcccgaccaatattctaaaaaggtctttttaaatttctcaccataaa 527
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 198 gcacactttttatgcccgaccaatattctaaaaagttctttttaaatttctcaccataaa 139
Query: 528 ttattacttttcctaatgaagtagaccatatcagcctgtgaatgatcataaagggaatat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ttattacttttcctaatgaagtagaccatatcagcctgtgaatgatcataaagggaatat 79
Query: 588 taaactggatgctggaatattagtagct 615
||||||||||||||||||||||||||||
Sbjct: 78 taaactggatgctggaatattagtagct 51
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
