BAC Information

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BAC

Clone NameMSMg01-137G11
Chromosome4 (Build37)
Map Location 107,670,708 - 107,671,075
singlet/doubletsinglet
Overlap geneSlc1a7
Upstream geneSsbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2
Downstream genePodn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110, Prpf38a, Orc1l, Cc2d1b, Zfyve9, LOC100040326, 3110021N24Rik, Btf3l4, Txndc12, Kti12, Rab3b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137G11.T7 (MSMg01no137_g11.b1)MSMg01-137G11.TJ (MSMg01no137_g11.g1)
ACCAG343342AG343343
length729724
length of high quality
(start - end)
334 (64 - 397)376 (66 - 441)
definitionCHROMAT_FILE: MSMg01no137_g11.b1 PHD_FILE: MSMg01no137_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:04 2005CHROMAT_FILE: MSMg01no137_g11.g1 PHD_FILE: MSMg01no137_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TATAATTTGCGGCGCTATACGACTCCTATTTCGAGAGGATGGCGCGGAAT
TCGCATATTGCTCACTACTGGCTTATTCAAACATTAACAGAAAGATTGCA
GGGCATCAGGACTTTGTTCATGTGGGCTGGGGGCTTATCTTGTTCACATA
GCAACCAGTTGATGTATGACTTTACCTGGTGTCAAGGGGCAGTAGACAGA
GGGGAGGTTCCGGCCAGGTGGTGTTGACCCAGACAAGATAGCCCTGCTTG
TACAATCAAGCTGTTCTTAGGAATGTCTTAACAACAGCCCTGTCTGTTCT
GCTTTGTTCTTGGCCCTTTTTTCAGAGGCTCATAGACAACTCTTTTACAT
GAATCACAAGATACAAAATCTTATTTTCTTTCATAGGAAAATAACCCCAG
CAGAAACAGAGGCAGGCAGATCTCTGAGGACTGCCTGGTTTACATAGAGT
TCCAGGACTGCCTGAGCTACACTGGGAAACCCTGTCTCATAAACCCATAT
AATATTAGTAACTGTCATGAGCTTCTGATATGAACTGTTTACAGAGCCTA
CCCACTGTAGCTGACATGAAATAAGAGGGTAGGCCTATTAATCCTTAACA
GGCCGGGCGGTGGTAGCGCACGCCCTTTATCCCAGCACTTGGGAGGCAGA
GGTCGGCGGATTTCTGTATTCGAGGGCCGCCTGCCCTACTAAGTGTGTTC
CAGGAATAGTCTGTGGTCATCAGAGAGAT
ATGCAGTGAGAGCCTGGCGGCGCCTGGTTCTAACAGGAGGTGAACTATAG
AAGTTTCGCGGAATTCAGATGAAACACCAGAGCTTGAGCAGCCTTTTTGG
ACCATGAGACACACTGCTGATGAGACCCAGGAGCTCAGCAACCAAACACA
CAGGCCAAGCCTGAGATCCTGGTGACAAGGGACGAGCGAGCCCTTCTGAG
AAAAAGCCTTCCTCTCACCGAAGGCCTCACTGCAGTTCTCAGCTCAGAGT
AGACTCATCTTATCACTGACAAACTTGCCAGCAGACTCAATGAACAACTT
TTGCTGTGCAGTGTTAGTGCACGCTTTTCATCCTAGCACTAGGGAGACAG
ATGCAGGCGGATCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGCAAA
TTTCAGAACAGCCAGGGCTACACAGAGAAACCCTGTCTTGGGAAAGAAGA
GGAGGAGGAGGAGGAGGAGGAAAAAGAAGGAGGAGGAGGAGGTGCTCACT
CATAATTTTAGATAATATTTCAAAATAGCGCACATTTCTATTGCTTAAAA
ATATATACAACTAATCACCCCATATATCCCCTCAGCTCGTTTCTCTGATT
AATTTGTCACCTCCTTCCTCTCATCACATCCTGTTACACATTACACTTTA
ATCCCTTTCTCTCTACCTCTCGTTCCCTTCCTTGCAATCTTCCTCATTAC
ATATCTTAGCTTCCACCTTATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_g11.g1 MSMg01no137_g11.g1 CHROMAT_FILE:
MSMg01no137_g11.g1 PHD_FILE: MSMg01no137_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:05 2005
         (376 letters)



>mm_chr4_107670638_107671414
          Length = 777

 Score =  611 bits (316), Expect = e-179
 Identities = 355/368 (96%), Gaps = 1/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagatgaaac-accagagcttgagcagcctttttggaccatgagacacactgctgatgag 59
           |||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct: 438 cagatgaaacaaccagagcttgagcagcctttttagaccatgagacacattgctgatgag 379

                                                                       
Query: 60  acccaggagctcagcaaccaaacacacaggccaagcctgagatcctggtgacaagggacg 119
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 378 acccaggagctcagcaaccaagcacacaggccaagcctgagatcctggtgacaagggacg 319

                                                                       
Query: 120 agcgagcccttctgagaaaaagccttcctctcaccgaaggcctcactgcagttctcagct 179
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agcaagcccttctgagaaaaagccttcctctcaccgaaggcctcactgcagttctcagct 259

                                                                       
Query: 180 cagagtagactcatcttatcactgacaaacttgccagcagactcaatgaacaacttttgc 239
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 cagagcagactcatcttatcactgacaaacttgccagcagactcaatgaacaacttttgc 199

                                                                       
Query: 240 tgtgcagtgttagtgcacgcttttcatcctagcactagggagacagatgcaggcggatct 299
           |||||||||  |||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 198 tgtgcagtggcagtgcacgcttttcatcctagcactagggagacagaggcaggtggatct 139

                                                                       
Query: 300 ctgtgagttcaaggccagcctggtctacagagcaaatttcagaacagccagggctacaca 359
           ||||||||||||||||||||||||||||||| | ||||||||||||||||| ||||||||
Sbjct: 138 ctgtgagttcaaggccagcctggtctacagatcgaatttcagaacagccagagctacaca 79

                   
Query: 360 gagaaacc 367
           ||||||||
Sbjct: 78  gagaaacc 71


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 376
Length of database: 777
Length adjustment: 9
Effective length of query: 367
Effective length of database: 768
Effective search space:   281856
Effective search space used:   281856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)