BAC Information

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BAC

Clone NameMSMg01-137I07
Chromosome4 (Build37)
Map Location 77,415,560 - 77,415,905
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667858, LOC667862
Downstream geneLOC100039974, LOC100039996
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-137I07.T7 (MSMg01no137_i07.b1)MSMg01-137I07.TJ (MSMg01no137_i07.g1)
ACCAG343422AG343423
length675728
length of high quality
(start - end)
38 (47 - 84)348 (74 - 421)
definitionCHROMAT_FILE: MSMg01no137_i07.b1 PHD_FILE: MSMg01no137_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:14 2005CHROMAT_FILE: MSMg01no137_i07.g1 PHD_FILE: MSMg01no137_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:54:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATAATTTGCCGGGGNNNNNCCCGCTAATCGACTCCTAATCGAGAGGAT
CCGCGGAATTCCCTCAAATTTCTCATTTAAGCAATNAAAGNGGTTGGTTA
GGATCCCCGGGGGTTTTTTTAAGTTTTTTGGGGGTTTTTGGTGTGTTTTT
GGGGGGGGGGGTNTTTTGNGGGTTGTTGAATGTTTTTGGGAGGGGTAGTT
TATTCCTTGGATCCGGCAATTTCACGGGTTTCCTGGGAAAAGGAGGAGGC
CTTTGGAAGTCATCCTGGCTTCCCCTTTGGCCCCCCCCCCTCTTGGTCAT
AGGAATGATTGGGTGGAATGCCCCCGGTCCTCCCTTAGGGTTCCCTGGGA
TTCTTGGGTTTTATATTCTAATACTTTTCTTCCCCCGATTTTTTTCGGGG
ATACTCCCGGGGATATTGGCCTCTCTTGGGTCTAAGTAAAAATTCCCCCT
CCTTTCCCGGGTTTGTTTTTTTATTCTTCGGGGACGCGCCGGCCCCCTCC
TTCCCCTTTTTTTTTTCCCCCCGTTCCTGGTGGTGTTTTTTTTGGCGGGG
CGTTTTTTCTCCCTTTCTCCCCCCTGGGGTTTTTCTTTCTTTCTTCCCTC
CCCCCCTTCTTTTTGTCCACTCTCCCATCGCTCGCGGTCTCCCCCCCACC
CCTTCTCTTTCCTCCCCCTCCCCCC
AATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCCTATGTCCAACCCAAGTGACACGTTT
TTTTTTTTCAAACTGGACCATACTTCCCAATCCTTCTAATCCTTTAAAAT
GGTTCTCATTTTTAGTGAGCTAGCAAGCCTTCAAATATATGAGCCTTTAA
AGCCATTCTTATTCAAACTACTGCAATACCACGAAGATATTCTTTCATTT
TAGTTTTATTATTTTTAAACAAGGTCTCATGTATCCTACCCAGTGGATAA
TATTGAGTTTGCAAGCCATTTCTTTTCACCTTGTCCATACTGAATTTACA
AGTATGTATCAACATAGCTGTTTTGAGCACAGATTTCTGCATACCAGGCA
ACTGTTATGAGCACTGAGCTCCATCTGCAGCCCAGGATGTTGTTTATATT
TCATAAGTCCCAGTATGCCTTTCTTGAAAAGGTTTTTAGTAAGTTTCTTC
TGCTTTATAAAAGAGTCCGAAATAAGCCTTTCTAGAATATTTTGATTCTG
AACCTCCTACTTATCTCTAAATTTATCTTCTTTTGCAACTTTGCTCTATA
TAATCCAAACCAAAAATTTTTACGCCCCTTAACCCGAATACTTCCCCTTC
TTTTGGAATTACTGTGAAAACCCTGAAATTTAAGGCCGGAGTCAAATTCC
CGCAAAGAATCTCCTGTCAATTAAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no137_i07.g1 MSMg01no137_i07.g1 CHROMAT_FILE:
MSMg01no137_i07.g1 PHD_FILE: MSMg01no137_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:14 2005
         (348 letters)



>mm_chr4_77415208_77415955
          Length = 748

 Score =  646 bits (334), Expect = 0.0
 Identities = 344/348 (98%), Gaps = 2/348 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctatgtccaacccaagtgacacgtttttttttttcaaactggaccatacttcccaatcc 60
           ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||
Sbjct: 698 cctatgtccaacccaagtgacacg--tttttttttcaaactggaccatacttcccaatcc 641

                                                                       
Query: 61  ttctaatcctttaaaatggttctcatttttagtgagctagcaagccttcaaatatatgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640 ttctaatcctttaaaatggttctcatttttagtgagctagcaagccttcaaatatatgag 581

                                                                       
Query: 121 cctttaaagccattcttattcaaactactgcaataccacgaagatattctttcattttag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 580 cctttaaagccattcttattcaaactactgcaataccacgaagatattctttcattttag 521

                                                                       
Query: 181 ttttattatttttaaacaaggtctcatgtatcctacccagtggataatattgagtttgca 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 520 ttttattatttttaaacaaggtctcatgtatcctacccagtggataatattgagtttgta 461

                                                                       
Query: 241 agccatttcttttcaccttgtccatactgaatttacaagtatgtatcaacatagctgttt 300
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 agccatttattttcaccttgtccatactgaatttacaagtatgtatcaacatagctgttt 401

                                                           
Query: 301 tgagcacagatttctgcataccaggcaactgttatgagcactgagctc 348
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tgagcacagatttctgcataccaggcaactgttatgagcactgagctc 353


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 348
Length of database: 748
Length adjustment: 9
Effective length of query: 339
Effective length of database: 739
Effective search space:   250521
Effective search space used:   250521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)