Query= MSMg01no137_j20.b1 MSMg01no137_j20.b1 CHROMAT_FILE:
MSMg01no137_j20.b1 PHD_FILE: MSMg01no137_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:22 2005
(702 letters)
>mm_chr4_129006377_129007474
Length = 1098
Score = 1151 bits (595), Expect = 0.0
Identities = 653/697 (93%), Gaps = 41/697 (5%)
Strand = Plus / Minus
Query: 43 ctaaaggcctgccaccactgcctggctaatgttcttttttttttgtgaagtacaataact 102
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1098 ctaaaggcctgccaccactgcctggctaatgttcttttttttttgtgaagtacaataact 1039
Query: 103 cttggttttataccatagtttctcctctctttctgtctctctcatctctgctcagagttc 162
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1038 cttggttttataccatagtttctcctctctttctgtctctctcatctctgttcagagttc 979
Query: 163 ttggtaaacaagaatatattggctttt--------aaacaaacaaacaaacaaaaaagcc 214
||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 978 ttggtaaacaagaatatattggcttttaaacaaacaaacaaacaaacaaacaaaaaagcc 919
Query: 215 gggcagtggtggcacacacctttaatcctggcacttgggaggcagggacaggcgaatttc 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 918 gggcagtggtggcacacacctttaatcctggcacttgggaggcagggacaggcgaatttc 859
Query: 275 tgaatttgaggccagcttggtctacagagtgagttccaggaaagccagggctacacagag 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 858 tgaatttgaggccagcttggtctacagagtgagttccaggaaagccagggctacacagag 799
Query: 335 aaaccttgtctggg-aaaaaaaaaacaaaagggaatatattggcatatctaacagttatt 393
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 aaaccttgtctgggaaaaaaaaaaacaaaagggaatatattggcatatctaacagttatt 739
Query: 394 ttcttttcttcttacccattataaagagtgtatagttaattcacttctttatttcaataa 453
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 ttcttttcttcttacccattataaagagtgtatagttaattcacttctttatttcaataa 679
Query: 454 actgggaaaaaagtaagtttccttggagtaattctaaatttttggctaaggtaaataaaa 513
| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 agtgggaaaa----aagtttccttggagtaattctaaatttttggctaaggtaaataaaa 623
Query: 514 attgagtgctgtatttgtgccttagtagaaggctactagaagtaggaaatagactgccaa 573
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 attgagtgctgtatttgtgccttagtagaaggctactagaagtaggaaatagactgccaa 563
Query: 574 gtagtcagtgggtagaggtaggtgcgtactgccaagcttgcaacttaagtttgatcatct 633
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 562 gtagtcagtgggtagaggtaggtgcgtactgccaagcttgcaacttaagtttgatcacct 503
Query: 634 gaacccatggacggagagaac----------------------------tgcttgcttgc 665
||||||||||||||||||||| |||||||||||
Sbjct: 502 gaacccatggacggagagaactgcttgcttgcttgcttgcttgcttgcttgcttgcttgc 443
Query: 666 ttgctttcattcattcattcattcattcattccattg 702
|||||||||||||||||||||||||||||||||||||
Sbjct: 442 ttgctttcattcattcattcattcattcattccattg 406
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 5
Number of successful extensions: 5
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 702
Length of database: 1098
Length adjustment: 10
Effective length of query: 692
Effective length of database: 1088
Effective search space: 752896
Effective search space used: 752896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_j20.g1 MSMg01no137_j20.g1 CHROMAT_FILE:
MSMg01no137_j20.g1 PHD_FILE: MSMg01no137_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:22 2005
(633 letters)
>mm_chr4_128858624_128859656
Length = 1033
Score = 1170 bits (605), Expect = 0.0
Identities = 614/617 (99%)
Strand = Plus / Plus
Query: 17 ctctggaagagcagtcagtgctcttaaccactgagccatctctccaaccagttttatgca 76
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 217 ctctggaagagcagtcagtgctcttaaccactgagccatctctccaaccagttttatgca 276
Query: 77 ttttatatatggaagttaagtacataggaattctttctgaatgaaaataacttcctttct 136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttttatatatggaagttaagtacataggaattctttctgaatgaaaataacttcctttct 336
Query: 137 actatgtcttgaaaaaatgtacttactctgtttgatgaactggacacaactggaattctc 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 actatgtcttgaaaaaatgtacttactctgtttgatgaactggacacaactggaattctc 396
Query: 197 acttcacaacctgatttatgtgagccactgtttttcctgttggggacctctgaatggttg 256
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acttcacaacctgatttatgtgagccactgtttttcctgttggggacctctgaatggttg 456
Query: 257 gagatctgatagaacacaggggtaggtttcttactttcaggtatatttttatcagaggca 316
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gagatctgagagaacacaggggtaggtttcttactttcaggtatatttttatcagaggca 516
Query: 317 gtttgtttgatgttattgtttgaaggagaagaaagcaggggcccatcccaagcagaggta 376
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gtttgttcgatgttattgtttgaaggagaagaaagcaggggcccatcccaagcagaggta 576
Query: 377 ttgggactgaccccttcaggctcagtgcaacgtttactctcattaggatgagggtcatct 436
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 577 ttgggactgaccccttcaggctcagtgcaacgtttactctcattaggttgagggtcatct 636
Query: 437 tctctcgtctgttcccgaagggaggcaggattttccgtttctttggaggaatcgatcttg 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 tctctcgtctgttcccgaagggaggcaggattttccgtttctttggaggaatcgatcttg 696
Query: 497 tctttatcaagcacaggatcacaaactgttggattaaatggtgcgacaacagttactttt 556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 tctttatcaagcacaggatcacaaactgttggattaaatggtgcgacaacagttactttt 756
Query: 557 ataagattcttttcaagtacaaagtgtctgtttaatgatttactaggagtaggtccatga 616
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ataagattcttttcaagtacaaagtgtctgtttaatgatttactaggagtaggtccatga 816
Query: 617 ccaactgatgtacttag 633
|||||||||||||||||
Sbjct: 817 ccaactgatgtacttag 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 633
Length of database: 1033
Length adjustment: 10
Effective length of query: 623
Effective length of database: 1023
Effective search space: 637329
Effective search space used: 637329
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
