Query= MSMg01no137_l20.b1 MSMg01no137_l20.b1 CHROMAT_FILE:
MSMg01no137_l20.b1 PHD_FILE: MSMg01no137_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:32 2005
(622 letters)
>mm_chr4_122783804_122784825
Length = 1022
Score = 899 bits (465), Expect = 0.0
Identities = 477/481 (99%)
Strand = Plus / Minus
Query: 142 ttctaagctttcggttggcttttagcatctaggtttaaatgtctacaagacagacacacg 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1022 ttctaagctttcggttggcttttagcatctaggtttaaatgtctacaagacagacacacg 963
Query: 202 gaacattgacctcatgccccctttctgtgcttgtatgacacagggtctctttctgatgcc 261
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 962 gaacattgacctcatgccccctttctgtgcttgtatgacacagggtctcactctgatgcc 903
Query: 262 cagactggccttgaagctgtagcaattctcctgtctcagcctcctgagtgctgggattac 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 cagactggccttgaagctgtagcaattctcctgtctcagcctcctgagtgctgggattac 843
Query: 322 aagcatgagtcaccatgaccttgagaactatgttgtcctatgtacagaacggagctgctg 381
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 842 aagcatgagtcaccatgaccttgagaactatgttgtcctgtgtacagagcggagctgctg 783
Query: 382 gtagcataaatagggatcatcagggctaggttgactctccaccggctttctgcttgtcca 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 gtagcataaatagggatcatcagggctaggttgactctccaccggctttctgcttgtcca 723
Query: 442 tttgtcacctctagtgatctactaggaatcccagaagggagtaatgtccagcctggagag 501
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tttgtcacctctagtgatctactaggaatcccagaagggagtaatgtccagcctggagag 663
Query: 502 agcaaatgacatccccaaaggcccattttggtattgggccctgctctgttcacagcagct 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 agcaaatgacatccccaaaggcccattttggtattgggccctgctctgttcacagcagct 603
Query: 562 attcccaccagggctgttcatgtcttgacccaaagagaaagttgggggaggggagtaagg 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 attcccaccagggctgttcatgtcttgacccaaagagaaagttgggggaggggagtaagg 543
Query: 622 c 622
|
Sbjct: 542 c 542
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_l20.g1 MSMg01no137_l20.g1 CHROMAT_FILE:
MSMg01no137_l20.g1 PHD_FILE: MSMg01no137_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:32 2005
(648 letters)
>mm_chr4_122635734_122636782
Length = 1049
Score = 1239 bits (641), Expect = 0.0
Identities = 647/649 (99%), Gaps = 1/649 (0%)
Strand = Plus / Plus
Query: 1 tttggatgccaggctgccagccaaggcttctcaaagtacacacagtagccctgcttcacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttggatgccaggctgccagccaaggcttctcaaagtacacacagtagccctgcttcacc 260
Query: 61 caaactagccctttccatcagagaccccctagtcccaggacactaacatctgcctgcacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caaactagccctttccatcagagaccccctagtcccaggacactaacatctgcctgcacc 320
Query: 121 ttcaggtttcccctagccatcagcagcaagctgctgctcctcaggtgaaggtgagataca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttcaggtttcccctagccatcagcagcaagctgctgctcctcaggtgaaggtgagataca 380
Query: 181 gttcttccatcaacctagcaacagcaacacccactaaaccctgagccaagccagctgact 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcttccatcaacctagcaacagcaacacccactaaaccctgagccaagccagctgact 440
Query: 241 gtcttccagccagggacatggtgtgccagtctcttctaagaacagcgtcactagcgggtc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtcttccagccagggacatggtgtgccagtctcttctaagaacagcgtcactagcgggtc 500
Query: 301 ccattctccctcagccactgccctattccgccaggctctctattgctcctgccaggcaag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattctccctcagccactgccctattccgccaggctctctattgctcctgccaggcaag 560
Query: 361 gaagagttgccagctgtggttcctggggcaggtagaccgcgcccccccac-tcccgcaca 419
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 561 gaagagttgccagctgtggttcctggggcaggtagaccgcgcccccccccctcccgcaca 620
Query: 420 cttcctaaagccttacttcccatccactgtgaccctgagtggcagccaaggaatgtgtcc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cttcctaaagccttacttcccatccactgtgaccctgagtggcagccaaggaatgtgtcc 680
Query: 480 tggtcttgttttaccactggggaaaactgaatgaccctaccaagagcccatcagttccct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tggtcttgttttaccactggggaaaactgaatgaccctaccaagagcccatcagttccct 740
Query: 540 ctggctaccaaaggagcccgaggagctcctgttactcaccttagccacatccaataggta 599
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ctggctaccaaaggagcccgaggagctcctgttactcaccttagccacatccaataggta 800
Query: 600 gatctgcaggaagaatcccagtgcgcagccggtcaactggtacggggcc 648
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gatctgcaggaagaatcccagtgcgcagccggtcaactggtacggggcc 849
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1049
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1039
Effective search space: 662882
Effective search space used: 662882
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
