Query= MSMg01no137_n07.b1 MSMg01no137_n07.b1 CHROMAT_FILE:
MSMg01no137_n07.b1 PHD_FILE: MSMg01no137_n07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:40 2005
(486 letters)
>mm_chr4_16796154_16797039
Length = 886
Score = 886 bits (458), Expect = 0.0
Identities = 479/486 (98%)
Strand = Plus / Plus
Query: 1 ggaaaaaagacctgaagacacttcacttgaagttcaaaaagtgagaaaagcaacagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggaaaaaagacctgaagacacttcacttgaagttcaaaaagtgagaaaagcaacagaaaa 260
Query: 61 gtaggggtaacagggatgtgagtgaaatagctactaaggtaggccaataaagcctgattc 120
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtaggggtaacagggatgtaagtgaaatagctactaaggtaggccaataaagcctgattc 320
Query: 121 tagcagaggactatagaaacaagtttgtggtactttatacgacctttgagaatgaaattc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagcagaggactatagaaacaagtttgtggtactttatacgacctttgagaatgaaattc 380
Query: 181 cctatcatttctaatccatactctatatagataatccaatgaaaaataatttccatcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cctatcatttctaatccatactctatatagataatccaatgaaaaataatttccatcatg 440
Query: 241 ttgatgtcattgtactgacattggaaattgtagatgatttctctcttatatcagatttat 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 441 ttgatgtcattgtactgacattggaaattgtagatgatttctctcttagatcagatttat 500
Query: 301 tacatttaccattgtgctttttatactgtttcttgtatctttcttctttctgtgtcaatt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tacatttaccattgtgctttttatactgtttcttgtatctttcttctttctgtgtcaatt 560
Query: 361 tcattctacaagaaagatttcttcacataagttgtaccctatgtcttgtcaattttctcc 420
|||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 561 tcattctacaagaaagatgtcttcacataagttgcaccctatgtcttgtcaattttctcc 620
Query: 421 tcttaacctgacccgtctttattactttcattcctatatataagatatgtaattttcatc 480
||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 621 tcttaacctgacctgtttttattactttcattcctatatataagatatgtaattttgatc 680
Query: 481 tacttc 486
||||||
Sbjct: 681 tacttc 686
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 486
Length of database: 886
Length adjustment: 10
Effective length of query: 476
Effective length of database: 876
Effective search space: 416976
Effective search space used: 416976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no137_n07.g1 MSMg01no137_n07.g1 CHROMAT_FILE:
MSMg01no137_n07.g1 PHD_FILE: MSMg01no137_n07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:54:40 2005
(312 letters)
>mm_chr4_16953252_16953962
Length = 711
Score = 487 bits (252), Expect = e-142
Identities = 292/312 (93%), Gaps = 14/312 (4%)
Strand = Plus / Minus
Query: 1 attctctagaattatgatttgctatttcacggaaacagaaaatctatgagaatacaacat 60
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 466 attctctagaattatgatttgctatttcacggaaacagaaaatctatgagaatacagcat 407
Query: 61 gttggaaagtaacagacattgtcaaacataaatgcatatagtgtttcatgtaatatagcc 120
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 406 gttggaaagtaacagactttgtcaaacataaatgcatatagtgtttcgtgtaatatagcc 347
Query: 121 atggtgttgtgctggtgaaaatcatgatgctagctagcaaaaggagcaagtcttcaacaa 180
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 346 atggtgttgtgctggtgaaaatcatgatgctagctagcaaaaggagcaaggcttcaacaa 287
Query: 181 tacttctgtttatgacaaaattctgtgaattccagttacagctaatgtttataatttgtc 240
|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 taattctgttcatgacaaaattctgtgaattccagttacagctaatgtttataatttgtc 227
Query: 241 cccttgctgtttatctctctctcatctgactcatctctcataaggtggatgagtcacctt 300
||||||||||||| |||||||||||| ||| ||| |||||||||||||||
Sbjct: 226 cccttgctgttta-ctctctctcatc-------tct-tca-----tggatgagtcacctt 181
Query: 301 atttctcactca 312
||||||||||||
Sbjct: 180 atttctcactca 169
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space: 212706
Effective search space used: 212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
