Query= MSMg01no138_c15.b1 MSMg01no138_c15.b1 CHROMAT_FILE:
MSMg01no138_c15.b1 PHD_FILE: MSMg01no138_c15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:07 2005
(276 letters)
>mm_chr4_40154762_40155438
Length = 677
Score = 455 bits (235), Expect = e-132
Identities = 259/271 (95%), Gaps = 8/271 (2%)
Strand = Plus / Plus
Query: 5 gaattcctctcgtctc-ttctttgtaagagttgtaatgaatcagaaactataagcagtat 63
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctctcgtctaattctttgtaagagttgtaatgaatcagaaactataagcagtat 264
Query: 64 tcatcctgctgtgcagtggaacgggaaaccttatccatcctgcctgactgtctggggcag 123
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcaccctgctgtgcagtggaacgggaaaccttatccatcctgcctgactgtctggggcag 324
Query: 124 ctacaactagacccccctcctcttctcgccgttaagcaccattttctgttttggacttaa 183
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctacaattagacccccctcctcttctcgccgttaagcaccattttctgttttggacttaa 384
Query: 184 ataacatcagcctttctggttcccacatagaagcaggattttatttcttttttttttttt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ataacatcagcctttctggttcccacatagaagcaggattttatttcttttttttttttt 444
Query: 244 ttttttttttttttgggttttccaagacagg 274
||||||| || ||||||||||||||
Sbjct: 445 ttttttt-------ggtttttccaagacagg 468
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 677
Length adjustment: 9
Effective length of query: 267
Effective length of database: 668
Effective search space: 178356
Effective search space used: 178356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no138_c15.g1 MSMg01no138_c15.g1 CHROMAT_FILE:
MSMg01no138_c15.g1 PHD_FILE: MSMg01no138_c15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:07 2005
(616 letters)
>mm_chr4_40307353_40308368
Length = 1016
Score = 712 bits (368), Expect = 0.0
Identities = 374/376 (99%), Gaps = 1/376 (0%)
Strand = Plus / Minus
Query: 242 aggcagacatgtatgtgcttatttccctgattttgactgtgcctggctgtagttccttcc 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1016 aggcagacatgtatgtgcttatttccctgattttgactgtgcctggctgtagttccttcc 957
Query: 302 ttgactttctt-acaatgatagactctgctgaaattctaagttgaaataaacccctttct 360
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 956 ttgactttcttaacaatgatagactctgctgaaattctaagatgaaataaacccctttct 897
Query: 361 tttctaggttgcttttttttttctttttttctttttggccagggtgcttttatcatggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 896 tttctaggttgcttttttttttctttttttctttttggccagggtgcttttatcatggca 837
Query: 421 acagaagtgaaatgaaaacacgtaggatttaaaacaggtgtacaatttcacatgagagtc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 acagaagtgaaatgaaaacacgtaggatttaaaacaggtgtacaatttcacatgagagtc 777
Query: 481 tgacactccacagagagggtttatctggagatcaacttatgagtcagcttaatatagctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tgacactccacagagagggtttatctggagatcaacttatgagtcagcttaatatagctt 717
Query: 541 ggaaatcggagaaggggagattctaagagcagaccagatcataataccaaataggttagg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 ggaaatcggagaaggggagattctaagagcagaccagatcataataccaaataggttagg 657
Query: 601 tatttgaggcttggta 616
||||||||||||||||
Sbjct: 656 tatttgaggcttggta 641
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
