Query= MSMg01no138_g16.b1 MSMg01no138_g16.b1 CHROMAT_FILE:
MSMg01no138_g16.b1 PHD_FILE: MSMg01no138_g16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:27 2005
(220 letters)
>mm_chr4_116214564_116215188
Length = 625
Score = 296 bits (153), Expect = 7e-85
Identities = 160/165 (96%), Gaps = 5/165 (3%)
Strand = Plus / Minus
Query: 1 cacatttaagcatcaagccatcttctcagcccttttcttgactttctgtagcatactgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cacatttaagcatcaagccatcttctcagcccttttcttgactttctgtagcatactgtt 305
Query: 61 aacagaagcaatagcaaactaa-----tagcacaccagacctcatttggatttctagagg 115
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 304 aacagaagcaatagcaaactaatacattagcacaccagacctcatttggatttctagagg 245
Query: 116 gcttctcaggtaatgtaacagtgtgaaatgactggggttttgttt 160
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 gcttctcaggtaatgtaacagtgtgaaatgactggggttttgttt 200
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 625
Length adjustment: 9
Effective length of query: 211
Effective length of database: 616
Effective search space: 129976
Effective search space used: 129976
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no138_g16.g1 MSMg01no138_g16.g1 CHROMAT_FILE:
MSMg01no138_g16.g1 PHD_FILE: MSMg01no138_g16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:55:27 2005
(577 letters)
>mm_chr4_116074419_116075395
Length = 977
Score = 1094 bits (566), Expect = 0.0
Identities = 572/574 (99%)
Strand = Plus / Plus
Query: 1 tatttttttcttttattggaaacagattcttatcagggcagtggtggtataccttcaatc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tatttttttcttttattggaaacagattcttatcagggcagtggtggtataccttcaatc 260
Query: 61 ccagcactcaggaggcagaggcaggtaagtctttgtgagtttgaggtcagcttaagctac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagcactcaggaggcagaggcaggtaagtctttgtgagtttgaggtcagcttaagctac 320
Query: 121 agagtgagttcccaggacagccagagctatacagtgaaaataaaaacagcccctaaagtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agagtgagttcccaggacagccagagctatacagtgaaaataaaaacagcccctaaagtc 380
Query: 181 aagttttaccataagacctaaatctgaatttcttttcatgtaaaaacagtcacttcctat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagttttaccataagacctaaatctgaatttcttttcatgtaaaaacagtcacttcctat 440
Query: 241 aatggatggggctcctccagaaaagatgctcagcacagtcgtctccaggcatatttttac 300
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 441 aatggatggggctcctccagaaaagatgctcaacacagtcgtctccaggcatatttttac 500
Query: 301 cagtaagaaagtgagtgtacagtgtatgactgtttcatccccttcttttcccaggaacaa 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cagtaagaaagtgaatgtacagtgtatgactgtttcatccccttcttttcccaggaacaa 560
Query: 361 attccagccggagaatgagcccaacacacaataataagtcaagctattatttttccagct 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attccagccggagaatgagcccaacacacaataataagtcaagctattatttttccagct 620
Query: 421 tgtgtcttctttcacataaatcattaaataagccagtgtacttctattttagtattcatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgtcttctttcacataaatcattaaataagccagtgtacttctattttagtattcatt 680
Query: 481 agcattatattgtgccaaaattacagtagtttaattcttttactttcaaagcagctgatc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agcattatattgtgccaaaattacagtagtttaattcttttactttcaaagcagctgatc 740
Query: 541 tggtaaaggctgccttcactcaaacttgaccttg 574
||||||||||||||||||||||||||||||||||
Sbjct: 741 tggtaaaggctgccttcactcaaacttgaccttg 774
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space: 548289
Effective search space used: 548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
