Query= MSMg01no139_a24.b1 MSMg01no139_a24.b1 CHROMAT_FILE:
MSMg01no139_a24.b1 PHD_FILE: MSMg01no139_a24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:19 2005
(669 letters)
>mm_chr4_20273697_20274765
Length = 1069
Score = 1216 bits (629), Expect = 0.0
Identities = 656/665 (98%)
Strand = Plus / Minus
Query: 5 gaattccagaatccctccacctaaccctcattctgtctctcctcgctgaagcatcaaact 64
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 869 gaattccagaatccctccacctaaccctcattctgtgtctcctcgctgaagcatcaaact 810
Query: 65 gctcttttgaagtgagcttccccctgcctgtctctcttacttgttctctatcattcacag 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 809 gctcttttgaagtgagcttccccctgcctgtctctcttacttgttctctatcattcacag 750
Query: 125 gccctttcctcttaaatctctcactctatactactgcttcagaagaagcccacttgctat 184
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 749 gccatttcctcttaaatctctcactctataatactgcttcagaagaagcccacttgctat 690
Query: 185 gatactatctgtcgaagctaagggtaaagaatggcattagaaaggggattggaacgatgg 244
|| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 689 gagactatctgtccaagctatgggtaaagaatggcattagaaaggggattggaacgatgg 630
Query: 245 cacctaccacttctccattctccagggagacagaagagatccattcatgtcagactcaaa 304
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tacctaccacttctccactcttcagggagacagaagagatccattcatgtcagactcaaa 570
Query: 305 tataagaaagtatttcttgaggattttgcttttgttagtttgtttggtgctcttttgggt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 tataagaaagtatttcttgaggattttgcttttgttagtttgtttggtgctcttttgggt 510
Query: 365 gtttaaaataattgatgggaatagatgaggatgatctctcaaaatgagcaagttaaccct 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 gtttaaaataattgatgggaatagatgaggatgatctctcaaaatgagcaagttaaccct 450
Query: 425 atgaaggacagagttggactattcaaaacatttaccttaaacaatcctcattggagcaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atgaaggacagagttggactattcaaaacatttaccttaaacaatcctcattggagcaaa 390
Query: 485 gtgtgtttagatttcaattaatgggggatggcaggaaataagcaaggtgacaaggtgaaa 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 gtgtgtttagatttcaattaatgggggatggcaggaaataagcaaggtgacaaggtgaaa 330
Query: 545 tgaaatcttcaaacagtggcttgattagccttcaggtctcagaataaaattctgagccat 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tgaaatcttcaaacagtggcttgattagccttcaggtctcagaataaaattctgagccat 270
Query: 605 tattatcaccttttgaataatttctatcttgagacaacacatccaagtagggaatgtctc 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tattatcaccttttgaataatttctatcttgagacaacacatccaagtagggaatgtctc 210
Query: 665 ttgta 669
|||||
Sbjct: 209 ttgta 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_a24.g1 MSMg01no139_a24.g1 CHROMAT_FILE:
MSMg01no139_a24.g1 PHD_FILE: MSMg01no139_a24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:19 2005
(640 letters)
>mm_chr4_20203403_20204439
Length = 1037
Score = 1087 bits (562), Expect = 0.0
Identities = 610/640 (95%), Gaps = 24/640 (3%)
Strand = Plus / Plus
Query: 1 agaattatcgaggggacattctataaagtgcatatatgaggaaatttccaggaacgtgta 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 222 agaattatcgaggggatattctataaagtgcatatatgaggaaatttccaggaacatgta 281
Query: 61 actcaagagggaagtcccatactgaatatggatggtttggttctctggactgaggtccgg 120
|||||||||||||||||||||||||||||||| |||||||
Sbjct: 282 actcaagagggaagtcccatactgaatatgga---------------------ggtccgg 320
Query: 121 gactgaatagaaaaggaaaggaaattgagcacttgccttctctctgtctatcctggctgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gactgaatagaaaaggaaaggaaattgagcacttgccttctctctgtctatcctggctgc 380
Query: 181 acacataccttcgccagctgccttatgccccgtaagtcttgcatgtcttgccattattct 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 acacataccttcgccagctgccttatgccccttaagtcttgcatgtcttgccattattct 440
Query: 241 ggactgtatgcctttgccaagctgaaataaacatttccttaagtttctttgcctaggcct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggactgtatgcctttgccaagctgaaataaacatttccttaagtttctttgcctaggcct 500
Query: 301 attgccacagcaaccaaagaagtatgtaatgcattgaggaagcagtggaggctgtgatag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attgccacagcaaccaaagaagtatgtaatgcattgaggaagcagtggaggctgtgatag 560
Query: 361 ctgagtggacgcggctcctttaggagacaatgatgtagttacacatagtgttgagttttc 420
||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 561 ctgagtggaggcggctcctttaggagacaat-at--agttacacatagtgttgagttttc 617
Query: 421 taaaggcagttgaaatatatacttcaatgatatataaatttagtatcaaaaaagcatatc 480
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 618 taaaggcagttgaaatatatacttcaatgatatataaattgagtatcaaaaaagcatatc 677
Query: 481 cagatagatcgatgcctgaaaccaaaatcactattcagacaacaagcataaacagcttaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 678 cagatagatcgatgcctgaaaccaaaatcactattcagacaacaagcataaacagcttaa 737
Query: 541 cagctttactgatcaatcatagttttcttcctaaacatacacatctcccagtagtttgct 600
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 cagctttactgatcaaccatagttttcttcctaaacatacacatctcccagtagtttgct 797
Query: 601 atagtaatacatgattcattgggtgagtgaatctttaact 640
||||||||||||||||||||||||||||||||||||||||
Sbjct: 798 atagtaatacatgattcattgggtgagtgaatctttaact 837
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 640
Length of database: 1037
Length adjustment: 10
Effective length of query: 630
Effective length of database: 1027
Effective search space: 647010
Effective search space used: 647010
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
