BAC Information

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BAC

Clone NameMSMg01-139C18
Chromosome4 (Build37)
Map Location 71,231,565 - 71,350,030
singlet/doubletdoublet
Overlap geneLOC667638
Upstream geneLOC100039565, LOC100039979
Downstream geneEG667649, Tle1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139C18.T7 (MSMg01no139_c18.b1)MSMg01-139C18.TJ (MSMg01no139_c18.g1)
ACCAG344645AG344646
length725716
length of high quality
(start - end)		679 (47 - 725)647 (70 - 716)
definitionCHROMAT_FILE: MSMg01no139_c18.b1 PHD_FILE: MSMg01no139_c18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:29 2005CHROMAT_FILE: MSMg01no139_c18.g1 PHD_FILE: MSMg01no139_c18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:29 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,231,565 - 71,232,239)(71,349,384 - 71,350,030)
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCACTGGTAACCAGTGTTTATTCATTAGAGCGGTAACTTGAGCCAT
CTTGTGGGTTTGGAAAATAAATTCATAAATGAAAACCAACACTTACAATA
TTATTTTTAAATACGTTCCCCAGAACATCTCCATAATCTATTCATATTTC
CCACCATTTACCCAACTCTTCCTCTTTGAAAGAATAAATGACACATACCT
TAGTGTGCCACCCAAAGAAAGATGTAAATGTCTGTAAATAACACCCATGA
TGAAGAAAGTGAATATCTTTCTTTGTCCAAAAAGCTCAATGATGATATAG
ATGTATCTGTAAATCAATGAGAGACACCAAGAGTTATTACTGAAGAGGTC
ACTTGTATGTTTTTAGTTGTATATGGCTGTATGAGTTATATGTTATCTTG
TCTCTTTGGATGTGATCTAAGTTCTAAATCACCAGAATTAAGATTGCTAT
CTTGTTAAGCCATGGCATGGACAAAAAATATATACTAGGGCTAAAACCTC
CCAAATAATCTTTGAGATAAAATGATCCTCAGAAGAAAATACTGATTATA
TATGATGAACACAGTGCACAGCAAAATATGCTCTTACAAGTACTTTGTTA
ATCCAGAAGTAGTTACAATCACTGAAACATAATCCGAAAATGAACATAGT
ACTGCCCACTTAAGTCTCAGCACTC

AATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTACATAGGGTAGGCTGGGTTGGAAATCATA
GAGATCTATCTGCCTGCCTCTACCTCCTGGAATTAAAGGCATATGTTGCC
ACGCCCAGCTTATTTTATTATTTTTTTCAGTCAAAGTATCACTATATAAC
ATTGGCTGGCAGGGAACTCATAGAGATTGATACACATGCCTCTGCCTAAT
AGAGAGTTTTCTAACTATTTAGAAATTTTTAAATTATCAGACATAGTCTT
AGAATTTCATCTTTGCAAATCTCCCCTTCTCAAACTTGTCTTATAAGTAG
TTACCCAACTTTTCTATGTCAATGATATGCACAATCTACATAAATATCAT
TTAACTTTTGTAATCTGACCTACTCACTTAAAAATGTTTACAGATAAAAA
ACATCCTCTATCAAATAATTCTAGGAGAGTATATACATACTTGTCTGAGT
GTAAACTTTAAATACCTGAAATAAGAAAACAAAGGATCTTATTAAATTTA
TAAAGGGAATTATTTTTGATATACTGAGTGGCATATTTAACCAACTCAGC
ATAGCTACTGACAATAACATCATTATCTCTGATAGATATCGATGACCTTC
AGTATTAATAAGACATGAGGTTTAGAGTTTGATTCCCCTATAACCTCTTT
GAAAAAGAATTATCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_c18.b1 MSMg01no139_c18.b1 CHROMAT_FILE:
MSMg01no139_c18.b1 PHD_FILE: MSMg01no139_c18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:29 2005
         (679 letters)



>mm_chr4_71231361_71232439
          Length = 1079

 Score = 1282 bits (663), Expect = 0.0
 Identities = 672/675 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactggtaaccagtgtttattcattagagcggtaacttgagccatcttgtgggtt 64
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactggaaagcagtgtttattcattagagcggtaacttgagccatcttgtgggtt 264

                                                                       
Query: 65  tggaaaataaattcataaatgaaaaccaacacttacaatattatttttaaatacgttccc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggaaaataaattcataaatgaaaaccaacacttacaatattatttttaaatacgttccc 324

                                                                       
Query: 125 cagaacatctccataatctattcatatttcccaccatttacccaactcttcctctttgaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cagaacatctccataatctattcatatttcccaccatttacccaactcttcctctttgaa 384

                                                                       
Query: 185 agaataaatgacacataccttagtgtgccacccaaagaaagatgtaaatgtctgtaaata 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agaataaatgacacataccttagtgtgccacccaaagaaagatgtaaatgtctgtaaata 444

                                                                       
Query: 245 acacccatgatgaagaaagtgaatatctttctttgtccaaaaagctcaatgatgatatag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acacccatgatgaagaaagtgaatatctttctttgtccaaaaagctcaatgatgatatag 504

                                                                       
Query: 305 atgtatctgtaaatcaatgagagacaccaagagttattactgaagaggtcacttgtatgt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 atgtatctgtaaatcaatgagagacaccaagagttattactgaagaggtcacttgtatgt 564

                                                                       
Query: 365 ttttagttgtatatggctgtatgagttatatgttatcttgtctctttggatgtgatctaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ttttagttgtatatggctgtatgagttatatgttatcttgtctctttggatgtgatctaa 624

                                                                       
Query: 425 gttctaaatcaccagaattaagattgctatcttgttaagccatggcatggacaaaaaata 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gttctaaatcaccagaattaagattgctatcttgttaagccatggcatggacaaaaaata 684

                                                                       
Query: 485 tatactagggctaaaacctcccaaataatctttgagataaaatgatcctcagaagaaaat 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tatactagggctaaaacctcccaaataatctttgagataaaatgatcctcagaagaaaat 744

                                                                       
Query: 545 actgattatatatgatgaacacagtgcacagcaaaatatgctcttacaagtactttgtta 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 actgattatatatgatgaacacagtgcacagcaaaatatgctcttacaagtactttgtta 804

                                                                       
Query: 605 atccagaagtagttacaatcactgaaacataatccgaaaatgaacatagtactgcccact 664
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 805 atccagaagtagttacaatcacagaaacataatccgaaaatgaacatagtactgcccact 864

                          
Query: 665 taagtctcagcactc 679
           |||||||||||||||
Sbjct: 865 taagtctcagcactc 879


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1079
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1069
Effective search space:   715161
Effective search space used:   715161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no139_c18.g1 MSMg01no139_c18.g1 CHROMAT_FILE:
MSMg01no139_c18.g1 PHD_FILE: MSMg01no139_c18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:29 2005
         (647 letters)



>mm_chr4_71349006_71350052
          Length = 1047

 Score = 1243 bits (643), Expect = 0.0
 Identities = 646/647 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ctacatagggtaggctgggttggaaatcatagagatctatctgcctgcctctacctcctg 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 ctacatagggtaggctgggttggaaatcatagagatctatctgcctgcctctacctcctg 966

                                                                        
Query: 61   gaattaaaggcatatgttgccacgcccagcttattttattatttttttcagtcaaagtat 120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 965  gaattaaaggcatatgttgccacacccagcttattttattatttttttcagtcaaagtat 906

                                                                        
Query: 121  cactatataacattggctggcagggaactcatagagattgatacacatgcctctgcctaa 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905  cactatataacattggctggcagggaactcatagagattgatacacatgcctctgcctaa 846

                                                                        
Query: 181  tagagagttttctaactatttagaaatttttaaattatcagacatagtcttagaatttca 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845  tagagagttttctaactatttagaaatttttaaattatcagacatagtcttagaatttca 786

                                                                        
Query: 241  tctttgcaaatctccccttctcaaacttgtcttataagtagttacccaacttttctatgt 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785  tctttgcaaatctccccttctcaaacttgtcttataagtagttacccaacttttctatgt 726

                                                                        
Query: 301  caatgatatgcacaatctacataaatatcatttaacttttgtaatctgacctactcactt 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725  caatgatatgcacaatctacataaatatcatttaacttttgtaatctgacctactcactt 666

                                                                        
Query: 361  aaaaatgtttacagataaaaaacatcctctatcaaataattctaggagagtatatacata 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665  aaaaatgtttacagataaaaaacatcctctatcaaataattctaggagagtatatacata 606

                                                                        
Query: 421  cttgtctgagtgtaaactttaaatacctgaaataagaaaacaaaggatcttattaaattt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605  cttgtctgagtgtaaactttaaatacctgaaataagaaaacaaaggatcttattaaattt 546

                                                                        
Query: 481  ataaagggaattatttttgatatactgagtggcatatttaaccaactcagcatagctact 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545  ataaagggaattatttttgatatactgagtggcatatttaaccaactcagcatagctact 486

                                                                        
Query: 541  gacaataacatcattatctctgatagatatcgatgaccttcagtattaataagacatgag 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485  gacaataacatcattatctctgatagatatcgatgaccttcagtattaataagacatgag 426

                                                           
Query: 601  gtttagagtttgattcccctataacctctttgaaaaagaattatcag 647
            |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425  gtttagagtttgattcccctataacctctttgaaaaagaattatcag 379


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1047
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1037
Effective search space:   660569
Effective search space used:   660569
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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