Query= MSMg01no139_c20.b1 MSMg01no139_c20.b1 CHROMAT_FILE:
MSMg01no139_c20.b1 PHD_FILE: MSMg01no139_c20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:29 2005
(293 letters)
>mm_chr4_128526553_128527245
Length = 693
Score = 422 bits (218), Expect = e-122
Identities = 259/284 (91%), Gaps = 20/284 (7%)
Strand = Plus / Plus
Query: 8 aattcccagatta-ccatctgacctccccatgtgcacacacacacacacacacacacaca 66
|||||||||| || || ||||||||||||||||| ||||| ||
Sbjct: 226 aattcccagagtatcc-tctgacctccccatgtg------------------cacactca 266
Query: 67 cacacacacacacacacacacacacaactgcagtaaagtttgttttaaaaagaaaggtat 126
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 267 cacacacacacacacacacacacataactgcagtaaagtttgttttaaaaagaaaggtat 326
Query: 127 gtagaagaggatttaggagccagcatagaggggaaatgtggctactgggtttgaagtatg 186
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 gtagaagaggatttaggagtcagcatagaggggaaatgtggctactgggtttgaagtatg 386
Query: 187 gccttctgggatgactgtattccttcttcagtgacagaggacccaggagatggagcagcc 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gccttctgggatgactgtattccttcttcagtgacagaggacccaggagatggagcagcc 446
Query: 247 attggagggagggtgatggtgtgtgtgctgtgtgtgtgctcgct 290
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 447 attggagggagggtgatggtgtgtgtgctgtgggtgtgctcgct 490
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no139_c20.g1 MSMg01no139_c20.g1 CHROMAT_FILE:
MSMg01no139_c20.g1 PHD_FILE: MSMg01no139_c20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:29 2005
(654 letters)
>mm_chr4_128669108_128670161
Length = 1054
Score = 1245 bits (644), Expect = 0.0
Identities = 652/656 (99%), Gaps = 4/656 (0%)
Strand = Plus / Minus
Query: 1 tcaaaggcagaaacaaggaatatgtaatgagttcctgacaaagatgttgatgtctaataa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1008 tcaaaggcagaaacaaggaatatgtaatgagttcctgacaaagatgttgatgtctaataa 949
Query: 61 taagattggttaagtaaattccaacaagtttgtaatctgacaccctctccctccagaaca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 948 taagattggttaagtaaattccaacaagtttgtaatctgacaccctctccctccagaaca 889
Query: 121 cccccattgaacagcaccataactttggctatttgggaagatcacatttaaagcttgtca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 888 cccccattgaacagcaccataactttggctatttgggaagatcacatttaaagcttgtca 829
Query: 181 aggccacgacggtgaattcaaggccagcctgggcagtttaatgagaccttgtcccaaaat 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 828 aggccacgacggtgaattcaaggccagcctgggcagtttaatgagaccttgtcccaaaat 769
Query: 241 gaaaatgattag--agctggggctggctatagtacagagacagaagttttgggctcaatc 298
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 768 gaaaatga--agatagctggggctggctatagtacagagacagaagttttgggctcaatc 711
Query: 299 cccaggactgtaaaaataaaacacatatgcatatatgaacacagacaaccttcctgactt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 710 cccaggactgtaaaaataaaacacatatgcatatatgaacacagacaaccttcctgactt 651
Query: 359 ttaagtcagcagaaagacagtttttatccagagagatgagcctgtcttgaacaaggcaat 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 ttaagtcagcagaaagacagtttttatccagagagatgagcctgtcttgaacaaggcaat 591
Query: 419 gatgtcgccagcttttaggtgtgtcaaagtttcatcctgtcccaaaggagcctttctcaa 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 gatgtcgccagcttttaggtgtgtcaaagtttcatcctgtcccaaaggagcctttctcaa 531
Query: 479 ctgtaagtgcaagtgtgattaggaaaccattcttgccccacaggcacagtgcaaccattt 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 ctgtaagtgcaagtgtgattaggaaaccattcttgccccacaggcacagtgcaaccattt 471
Query: 539 tctacaccctagtggtaaatgatgttaaccagctagccagatggctcagctagtatagac 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tctacaccctagtggtaaatgatgttaaccagctagccagatggctcagctagtatagac 411
Query: 599 acttgccaccaaactctgaggacctgcgtttgattaacaagaccccacccccaatg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 acttgccaccaaactctgaggacctgcgtttgattaacaagaccccacccccaatg 355
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1054
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1044
Effective search space: 672336
Effective search space used: 672336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
