BAC Information

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BAC

Clone NameMSMg01-139G08
Chromosome4 (Build37)
Map Location 85,201,481 - 85,282,317
singlet/doubletdoublet
Overlap geneA930009N24
Upstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
Downstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139G08.T7 (MSMg01no139_g08.b1)MSMg01-139G08.TJ (MSMg01no139_g08.g1)
ACCAG344810AG344811
length783707
length of high quality
(start - end)		181 (49 - 229)585 (76 - 660)
definitionCHROMAT_FILE: MSMg01no139_g08.b1 PHD_FILE: MSMg01no139_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:47 2005CHROMAT_FILE: MSMg01no139_g08.g1 PHD_FILE: MSMg01no139_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:56:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,282,141 - 85,282,317)(85,201,481 - 85,202,063)
sequence
GATATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCCTTGGGCTCTTTGTATGTTTATTTTTAAATAAGTACGTTTCC
AGGCCATTCAAGAGCAGATTCAGGAGAGGGATGCTCATATTCTTTTTACA
TCACAGTGAGTTTTCATGTGTGCATGTACGAGTGCCTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCCCCCCCTCCCTCTTTTTT
CTCTTTCTTTTCCTTTTTTACCATTCCTCTCTTTCCCCCCCACCCTCTTT
CCCCCCCCCTATTACCTCTTTTTTCTTTCTTCCCCCTATTCCCTCCCCCT
TTCTTTTTTTTTCTCTACACCACCTTTTCCTTTTTTCACCCCCATTCCCT
CCATCCCCCCTCCCTCTTTTTTTCTTCCCCCCCCCTTTCCTTTTTTCCCC
CCCTCTTATCTCACCCCCTTCCTCCATTTCTCCTCTCCCCCCCTCTTTCT
CCCCTTTCTTTCCCCCCCCCCCTCCTCCCCTCCTCTCTTTTTTATTCCCT
TTTCCTTTTCCCCCTTCTACTACCTCCTCATCCCTACCTTCTCCCCTCTT
TTTTTATTCACCTTTCTCTTCACCCCTCTTTTTTTCTTTTTTTCCCTATC
CCCTCATTTTTCACTCCTTTTCTTCTCTTCTTCTCCCTCTTCTTATTATT
ATCCCCCCTTTTCCCCTTCTCTTATCTATTTCCCCCACCTCTCCTCCCTC
CTCTTTTCCCCCCTTCCCCCTTTCTTTTCCCAG

AAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGTCCTTGTTGAACCAACGTCCCTT
TCTATCTCTGAATTTTCTGCCTAAGGAAGAGCCACGTCGGATGGCCACGG
CTGTCATGTGCTCCAGTGTTGCTTTTGCTTTCCAGCAGATTCTCTGCATC
ATTTAAAATGTGGCAAGAGGAAATGGGAAAGAATTTATAAATATATTGAA
TGTTTGACTTACGTTCACACATAAGATAAACTAAAAGTTAAGCTCATACC
TGAAGGTTTGCAAAAGTGTTTATACTTGTAGGGACTTGATTAATGTCATT
TTTCATGTAGGATATGACTTAAGGTCACACGTGTTCCTCACCTTAGAGAA
CTGTAACGTTGTGCTCTTATGTAAGGATGAAAGATTAGCTGGTGTTATAT
AAAGAGGTAATTATTTAGAACAATCTCTTACAAGGTGTTTGTAGTGTATG
ATAATCATGGTTAAAATTTTTAACTGGAAGCTGATTTTATTTTCTGTATT
TTCTCCTTTTTTACCCCAGCCCCACCACTTCATCTCACACCATGCCATTC
TCAGTGTGGCCTCTCCATGAGAGAATTTTTTATGCTCTTCTGTGGGTTAC
ATACCTTTCAAGTCTGTCTGTGAGTTACTATAGGAAGCAGTAGTGTATCA
GTTATGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_g08.b1 MSMg01no139_g08.b1 CHROMAT_FILE:
MSMg01no139_g08.b1 PHD_FILE: MSMg01no139_g08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:47 2005
         (181 letters)



>mm_chr4_85282000_85282580
          Length = 581

 Score =  342 bits (177), Expect = 6e-99
 Identities = 177/177 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttgggctctttgtatgtttatttttaaataagtacgtttccaggccattcaag 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 gaattccttgggctctttgtatgtttatttttaaataagtacgtttccaggccattcaag 259

                                                                       
Query: 65  agcagattcaggagagggatgctcatattctttttacatcacagtgagttttcatgtgtg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 agcagattcaggagagggatgctcatattctttttacatcacagtgagttttcatgtgtg 199

                                                                    
Query: 125 catgtacgagtgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 181
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 catgtacgagtgcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt 142


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 43
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 181
Length of database: 581
Length adjustment: 8
Effective length of query: 173
Effective length of database: 573
Effective search space:    99129
Effective search space used:    99129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no139_g08.g1 MSMg01no139_g08.g1 CHROMAT_FILE:
MSMg01no139_g08.g1 PHD_FILE: MSMg01no139_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:56:47 2005
         (585 letters)



>mm_chr4_85201281_85202265
          Length = 985

 Score = 1089 bits (563), Expect = 0.0
 Identities = 578/583 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccttgttgaaccaacgtccctttctatctctgaattttctgcctaaggaagagccac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccttgttgaaccaacgtccctttctatctctgaattttctgcctaaggaagagccac 260

                                                                       
Query: 61  gtcggatggccacggctgtcatgtgctccagtgttgcttttgctttccagcagattctct 120
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 261 gtcggatggccacggctgtcatgtgctccagtgctgcttttgctttccagcagattctct 320

                                                                       
Query: 121 gcatcatttaaaatgtggcaagaggaaatgggaaagaatttataaatatattgaatgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcatcatttaaaatgtggcaagaggaaatgggaaagaatttataaatatattgaatgttt 380

                                                                       
Query: 181 gacttacgttcacacataagataaactaaaagttaagctcatacctgaaggtttgcaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gacttacgttcacacataagataaactaaaagttaagctcatacctgaaggtttgcaaaa 440

                                                                       
Query: 241 gtgtttatacttgtagggacttgattaatgtcatttttcatgtaggatatgacttaaggt 300
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gtgtttagacttgtagggacttgattaatgtcatttttcatgtaggatatgacttaaggt 500

                                                                       
Query: 301 cacacgtgttcctcaccttagagaactgtaacgttgtgctcttatgtaaggatgaaagat 360
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 501 cacacgtgttcctcaccttagagaactgtaacgttgtgcttttatgtaaggatgaaagat 560

                                                                       
Query: 361 tagctggtgttatataaagaggtaattatttagaacaatctcttacaaggtgtttgtagt 420
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 561 tagctggtgttatataaagaggtaattatttagaacaatttcttacaaggtgtttgtagt 620

                                                                       
Query: 421 gtatgataatcatggttaaaatttttaactggaagctgattttattttctgtattttctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gtatgataatcatggttaaaatttttaactggaagctgattttattttctgtattttctc 680

                                                                       
Query: 481 cttttttaccccagccccaccacttcatctcacaccatgccattctcagtgtggcctctc 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 cttttttaccccagccccaccacttcatctcacaccatgccattctcagtgtggcctctc 740

                                                      
Query: 541 catgagagaattttttatgctcttctgtgggttacataccttt 583
           |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 741 catgagagaattttttatgctcttctgtgggttacatatcttt 783


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 585
Length of database: 985
Length adjustment: 10
Effective length of query: 575
Effective length of database: 975
Effective search space:   560625
Effective search space used:   560625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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