Query= MSMg01no139_j23.b1 MSMg01no139_j23.b1 CHROMAT_FILE:
MSMg01no139_j23.b1 PHD_FILE: MSMg01no139_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:05 2005
(654 letters)
>mm_chr4_59724272_59725326
Length = 1055
Score = 1174 bits (607), Expect = 0.0
Identities = 640/651 (98%), Gaps = 1/651 (0%)
Strand = Plus / Plus
Query: 5 gaattccacggttgtactcatgtgtaattctgtactgagctcgttcagttgccatacttt 64
||||| |||||||||||| |||||||||||| ||||||||||||||||| |||||||| |
Sbjct: 205 gaatttcacggttgtactgatgtgtaattctatactgagctcgttcagtcgccatactgt 264
Query: 65 tgctcatagtgacaccatagacctggcatggatatggtctccaaaaagctgtttgagata 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgctcatagtgacaccatagacctggcatggatatggtctccaaaaagctgtttgagata 324
Query: 125 caaactttagtttgcaactgcccataacaaagtattttcttacacatgaagggcttataa 184
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 caaactttagtttacaactgcccataacaaagtattttcttacacatgaagggcttataa 384
Query: 185 aggtttgggaaaattacaaatgtgctgagaacaagcatcaacaatgggactctgttgaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aggtttgggaaaattacaaatgtgctgagaacaagcatcaacaatgggactctgttgaga 444
Query: 245 cagaaagactgttgggtgtttttggtggtgctcaaaccaaggatccatgcttggcaggtt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagaaagactgttgggtgtttttggtggtgctcaaaccaaggatccatgcttggcaggtt 504
Query: 305 ctcgctctgttgttgagcttcattggcagctgggctagggagatgtgggctcaggggttg 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcgctctgttgttgagcttcattggcagctgggctagggagatgtgggctcaggggttg 564
Query: 365 gaacacattttctaagcagtgatgcgtttaaagggcagaagatacatgtgtgcccagtac 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 gaacacattttctaagcagtgatgcgtttaaagggcagaagatatatgtgtgcccagtac 624
Query: 425 tgagctaagtagtatactttgctatcttactcgacttccatacaactgttttaagaggta 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tgagctaagtagtatactttgctatcttactcgacttccatacaactgttttaagaggta 684
Query: 485 caactataaatacttaggtttgaaaacagacatgattttatgtagctcaagcattgcttc 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 caactataaatacttaggtttgaaaacagacatgattttatgtagctcaagcattgcttc 744
Query: 545 taagatttggaaaggatattatgttggcaaagatctattaactattggctacactaccta 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 taagatttggaaaggatattatgttggcaaagatctattaactattggctacactaccta 804
Query: 605 tgtagctgggccaag-tagattaagattttaaaatggtctcgcagttaggt 654
| ||||||||||||| ||||||| |||||||||||||||||||| ||||||
Sbjct: 805 tatagctgggccaaggtagattaggattttaaaatggtctcgcaattaggt 855
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 654
Length of database: 1055
Length adjustment: 10
Effective length of query: 644
Effective length of database: 1045
Effective search space: 672980
Effective search space used: 672980
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_j23.g1 MSMg01no139_j23.g1 CHROMAT_FILE:
MSMg01no139_j23.g1 PHD_FILE: MSMg01no139_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:05 2005
(609 letters)
>mm_chr4_59830787_59831797
Length = 1011
Score = 1073 bits (555), Expect = 0.0
Identities = 581/591 (98%), Gaps = 4/591 (0%)
Strand = Plus / Minus
Query: 22 ctaactcagtctccaagtgtttctctgcacgaacgaacatgcctcaagtgcaaactgtgc 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1011 ctaactcagtctccaagtgtttctctgcacgaacgaacatgcctcaagtgcaaactgtgc 952
Query: 82 acttgaaggccaaaagagggtgtcagattcctggaactgaaattacagacagttgtgagc 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 951 acttgaaggccaaaagagggtgtcagattcctggaactgaaattacagacagttgtgagc 892
Query: 142 cgccatgtgggtgctcggaaccaaccctgggtcttctgcaagagcagcaaactcctaact 201
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 891 cgccgtgtgggtgctcggaaccaaccctgggtcttctgcaagagcagcaaactcctaact 832
Query: 202 gctgagtcatctctgtagccggagtccaggcattctaggaggaggtggttgcctttgctt 261
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 831 gctgagccatctctgtagccggagtccaggcattctaggaggaggtggttgcctttgctt 772
Query: 262 tgcatggaatgtgtcagaagaggagggctctctgagtcaccagctaactccatcttttaa 321
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 771 tgcatggaatgtgtcggaagaggagggctctctgagtcaccagctaactccatcttttaa 712
Query: 322 ttctttagaaatctccatactatttgcttcctttccttttttttt---aagctccacaca 378
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct: 711 ttctttagaaatctccatactatttgcttcgtttccttttttttttttaagctccacaca 652
Query: 379 attgtattacaattttaaaagaaaaacctcccgaacagacaagctgtgagactcagtgga 438
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 651 attgtattacaattttaaaagaaaaacctcccgaacagacaagctgtgagactcagcgga 592
Query: 439 gctgttgagaggaggaggagaaaggagcagagaaaaaaaaaaaaagaaaaaagccactcc 498
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 591 gctgttgagaggaggaggagaaaggagcagagaaaaaaaaaaaa-gaaaaaagccactcc 533
Query: 499 atttactcagcctggaggtctgacacacggtggggagggtgcccgagggaaattaagacg 558
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 532 atttactcagcctggaggtctgacacacggtggggagggtgcccgagggaaactaagacg 473
Query: 559 cccaaggtatcgcaaaagcatacttagcttctggccagcgtctgaaaggag 609
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 cccaaggtatcgcaaaagcatacttagcttctggccagcgtctgaaaggag 422
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1011
Length adjustment: 10
Effective length of query: 599
Effective length of database: 1001
Effective search space: 599599
Effective search space used: 599599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
