BAC Information

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BAC

Clone NameMSMg01-139L14
Chromosome4 (Build37)
Map Location 139,400,645 - 139,543,812
singlet/doubletdoublet
Overlap geneGm1667, Klhdc7a
Upstream genePla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1, 2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb, Pqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7
Downstream geneIgsf21, LOC100040728, Arhgef10l, Rcc2, Padi6, Padi4, Padi3, Padi1, Padi2, Sdhb, Atp13a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-139L14.T7 (MSMg01no139_l14.b1)MSMg01-139L14.TJ (MSMg01no139_l14.g1)
ACCAG345050AG345051
length722715
length of high quality
(start - end)		361 (44 - 404)428 (76 - 503)
definitionCHROMAT_FILE: MSMg01no139_l14.b1 PHD_FILE: MSMg01no139_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:13 2005CHROMAT_FILE: MSMg01no139_l14.g1 PHD_FILE: MSMg01no139_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,543,459 - 139,543,812)(139,400,645 - 139,401,072)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTGTAGCACACCCTAACCTCTAACTCATTTTGTAGCTGAGGATGA
CCTTTGAACTCCTGTTCTTCTGTGTCTGTGCCCCCAGCCCCTAGTTTTGG
GATTATAGATGCATACCTACCACGCCCAGTTTAAGCTGAGCTGGAAATCG
AATCCAGAACTAGGCAAACACTCTACCAACTGAGCCACATCCCTAACCCC
AAGATGTGCTTTGAAATGCTTTGGCCTGAGTTTGGACCCTATTACATCCA
CCTGCATTCCAAATGCCTGAATGAACAACATGGCCCCTGACTATAAAAGC
ATTTGGGAAATTCAGTCATCTATACATCTGGAGAGGAGAGGAGAGAATTA
GGGAAGGGGAGAGTTCCCCTTATTGATGATACTAATTTCCTATTTCCTTC
ACGATTAACCTACCTTTTATTTTTTGCATTCCCCCCCTTTCTCTCTCCCC
CTCCCCATCTCACCCCCTACCTATCCTTCTCATAAATGTTTTACGTAATC
ACCTCATTCCCCACCTCTTGTGTTACAAGTTTTTCTTGTCTATTCGCAAC
CCCCCGCCCCCCTTTTATACGATTAATTTTTAAATTTAATATCTAAACTT
CCCCCCCCCCCCTTTTTTTTATTTTTCTTTTTTTTTTCTCCCCGCTTTTT
CTCCCTCTCTTTAATTTATTCA

CGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGATCTGAGCTCAGGTCCTCATGCA
AGTTTATGTTATTCACTGAGGGATCTCCCAAGTCCATGTCCTCACCTAGT
GCTCCTCTCTCTACAACTGGCTCCAGGGTCACAGGCCTGGGTACCTACTC
TACTCAACATGAACTACTAAAATAACCTTGTGCTTCTCCCTCCCTCCCTC
TGTCTCTCCCTCTCTCCCTCTTTCCCTCTCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCCTCCATCCATCTATCCTCCCTTCTCCTGGTCCCTAAATCC
CTTTCCTCTTCTGACAACACAGTCTGACTGTGTAGTTTGGAACTCACCCT
GGAGACCAAGCTGGTCTCAAGCTCACAGAAATCCCCCTGCCTCTGCTTCC
TGAGTGGATTGCATTCTCCCCTGGCCTCCTTATTCCTTGATTTAACAACA
GAGGCGGCGGGGGGGGACAGGGGCGACATGTATCACCCCCCTTTTTATTT
ATTATCCCTATATTTATATTAATCCTCCCCCATGCCTTTGCTTTATTATG
CAATTATTATTCCCCGCCCCTATTTTATTTTCCCCCCCCCCCCCCCCTTT
GCTTTTATTTCCCCCCTCCCCCCTATTTTTTATTTTCCCACCCTCTACAT
TTTTTATACCCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no139_l14.b1 MSMg01no139_l14.b1 CHROMAT_FILE:
MSMg01no139_l14.b1 PHD_FILE: MSMg01no139_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:13 2005
         (361 letters)



>mm_chr4_139543052_139543812
          Length = 761

 Score =  669 bits (346), Expect = 0.0
 Identities = 352/354 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   attcacttgtagcacaccctaacctctaactcattttgtagctgaggatgacctttgaac 66
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 761 attcacttgtagcacaggctaacctctaactcattttgtagctgaggatgacctttgaac 702

                                                                       
Query: 67  tcctgttcttctgtgtctgtgcccccagcccctagttttgggattatagatgcataccta 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 tcctgttcttctgtgtctgtgcccccagcccctagttttgggattatagatgcataccta 642

                                                                       
Query: 127 ccacgcccagtttaagctgagctggaaatcgaatccagaactaggcaaacactctaccaa 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ccacgcccagtttaagctgagctggaaatcgaatccagaactaggcaaacactctaccaa 582

                                                                       
Query: 187 ctgagccacatccctaaccccaagatgtgctttgaaatgctttggcctgagtttggaccc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 ctgagccacatccctaaccccaagatgtgctttgaaatgctttggcctgagtttggaccc 522

                                                                       
Query: 247 tattacatccacctgcattccaaatgcctgaatgaacaacatggcccctgactataaaag 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 tattacatccacctgcattccaaatgcctgaatgaacaacatggcccctgactataaaag 462

                                                                 
Query: 307 catttgggaaattcagtcatctatacatctggagaggagaggagagaattaggg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 catttgggaaattcagtcatctatacatctggagaggagaggagagaattaggg 408


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 361
Length of database: 761
Length adjustment: 9
Effective length of query: 352
Effective length of database: 752
Effective search space:   264704
Effective search space used:   264704
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no139_l14.g1 MSMg01no139_l14.g1 CHROMAT_FILE:
MSMg01no139_l14.g1 PHD_FILE: MSMg01no139_l14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:13 2005
         (428 letters)



>mm_chr4_139400445_139401272
          Length = 828

 Score =  828 bits (428), Expect = 0.0
 Identities = 428/428 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agatctgagctcaggtcctcatgcaagtttatgttattcactgagggatctcccaagtcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agatctgagctcaggtcctcatgcaagtttatgttattcactgagggatctcccaagtcc 260

                                                                       
Query: 61  atgtcctcacctagtgctcctctctctacaactggctccagggtcacaggcctgggtacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtcctcacctagtgctcctctctctacaactggctccagggtcacaggcctgggtacc 320

                                                                       
Query: 121 tactctactcaacatgaactactaaaataaccttgtgcttctccctccctccctctgtct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tactctactcaacatgaactactaaaataaccttgtgcttctccctccctccctctgtct 380

                                                                       
Query: 181 ctccctctctccctctttccctctctccctccctccctccctccctccctccctcctcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctccctctctccctctttccctctctccctccctccctccctccctccctccctcctcca 440

                                                                       
Query: 241 tccatctatcctcccttctcctggtccctaaatccctttcctcttctgacaacacagtct 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tccatctatcctcccttctcctggtccctaaatccctttcctcttctgacaacacagtct 500

                                                                       
Query: 301 gactgtgtagtttggaactcaccctggagaccaagctggtctcaagctcacagaaatccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gactgtgtagtttggaactcaccctggagaccaagctggtctcaagctcacagaaatccc 560

                                                                       
Query: 361 cctgcctctgcttcctgagtggattgcattctcccctggcctccttattccttgatttaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cctgcctctgcttcctgagtggattgcattctcccctggcctccttattccttgatttaa 620

                   
Query: 421 caacagag 428
           ||||||||
Sbjct: 621 caacagag 628


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 828
Length adjustment: 9
Effective length of query: 419
Effective length of database: 819
Effective search space:   343161
Effective search space used:   343161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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