Query= MSMg01no139_m18.b1 MSMg01no139_m18.b1 CHROMAT_FILE:
MSMg01no139_m18.b1 PHD_FILE: MSMg01no139_m18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:18 2005
(642 letters)
>mm_chr4_154333277_154334320
Length = 1044
Score = 1180 bits (610), Expect = 0.0
Identities = 632/640 (98%), Gaps = 2/640 (0%)
Strand = Plus / Plus
Query: 5 gaattctgcacttatctcttgcactggacagaccatcctgtgctgcctcaaagccaagcc 64
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcacttatatcttgcactggacagaccatcctgtgctgcctcaaagccaagcc 264
Query: 65 ttcccctctgtcccagatgcttccatccatggtaacccaacaaccccttgtgctaagagc 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttcccctctgtcccagatgcttccatccatggtaacccaacaaccccttgtgctaagagc 324
Query: 125 ttctggagcaagaccttcggaatagatcatttacagcagtgggtcactaccatagcagga 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttctggagcaagaccttcggaatagatcatttacagcagtgggtcactaccatagcagga 384
Query: 185 cggtgtttccctagtgggcactgtgaaggcccttcagttcctgagctcagacatggctga 244
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gggcgtttccctagtgggcactgtgaaggcccttcagttcctgagctcagacatggctga 444
Query: 245 catccatccagagaacctggtttcattccacactggctattgtgctctgatgccagcctc 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 catccatccagagaacctggtttcattccacactggctattgtgctctgatgccagcctc 504
Query: 305 ctggtttgggcctggctaggtcttaggttgaccctaggaggaagcacggggccttatctc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctggtttgggcctggctaggtcttaggttgaccctaggaggaagcacggggccttatctc 564
Query: 365 ctccctcagcccctgcagagtattggggaaatagtacaggttccagatggagagacgctc 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 565 ctccctcagcccctgcagagtattggggaaatagtacaggttccagatggagggacgctc 624
Query: 425 ctacatggccatcccctaggtgtctagggtgtgactagtaaggtcacctggttaggaacc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ctacatggccatcccctaggtgtctagggtgtgactagtaaggtcacctggttaggaacc 684
Query: 485 acggttatcagttcttacaaagaggcccatccacactggcacagcattcatatgggggct 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acggttatcagttcttacaaagaggcccatccacactggcacagcattcatatgggggct 744
Query: 545 tatttttaggtctcccaccttctacctgccaacacaaaatgctgaatgaaactggaacac 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tatttttaggtctcccaccttctacctgccaacacaaaatgctgaatgaaactggaacac 804
Query: 605 acacacagaggtatgcacgcgcgcgc--gcacgcgctgag 642
||||||||||| |||||||||||||| ||||| ||||||
Sbjct: 805 acacacagaggcatgcacgcgcgcgcccgcacgagctgag 844
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1044
Length adjustment: 10
Effective length of query: 632
Effective length of database: 1034
Effective search space: 653488
Effective search space used: 653488
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_m18.g1 MSMg01no139_m18.g1 CHROMAT_FILE:
MSMg01no139_m18.g1 PHD_FILE: MSMg01no139_m18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:18 2005
(592 letters)
>mm_chr4_154453615_154454606
Length = 992
Score = 1122 bits (580), Expect = 0.0
Identities = 589/592 (99%)
Strand = Plus / Minus
Query: 1 cttgcacacctgggttggaggcttttcaatgtctgttagccaagagaaaggcagcttcaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 792 cttgcacacctgggttggaggcttttcaatgtctgttagccaagagaaaggcagcttcaa 733
Query: 61 gatttccactagcgcattttctcctctgcatccatgaaaggtatttccgcatttaaagtc 120
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 gatttccactagtgcattttctcctctgcatccatgaaaggtatttccgcatttaaagtc 673
Query: 121 tgtccgtccatcctccctccctccctcctgatatttaggaggacattaggacatgagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tgtccgtccatcctccctccctccctcctgatatttaggaggacattaggacatgagaca 613
Query: 181 acactttgatttactgatacattcactgctgtgaaattcttgagtaaatgtagacacttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 acactttgatttactgatacattcactgctgtgaaattcttgagtaaatgtagacacttg 553
Query: 241 ggctttatggttttcatttatgaatttattcctaggagcagacgcagtgctgggttagcg 300
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 ggctttatagttttcatttatgaatttattcctaggagcagacgcagtgctgggttagca 493
Query: 301 tgatggtgggagctactctctagtttatgcttgaaggatttgatctgcactgcatgtctg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 tgatggtgggagctactctctagtttatgcttgaaggatttgatctgcactgcatgtctg 433
Query: 361 aaactagtgctgagttcattgaaacttggtcgattcactagtggaaagactggacgggca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 aaactagtgctgagttcattgaaacttggtcgattcactagtggaaagactggacgggca 373
Query: 421 gccttgggttgggggtggggcagagcgcacaggttggttgttctgtgctctgaatcagat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 gccttgggttgggggtggggcagagcgcacaggttggttgttctgtgctctgaatcagat 313
Query: 481 ttgtgcctgacctggcattcctcaaggcttggctttgcaacacgatagcatatgtgcata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ttgtgcctgacctggcattcctcaaggcttggctttgcaacacgatagcatatgtgcata 253
Query: 541 aaattgactcttatatccagtttctagttgtctgacttgaaaaattcttagg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 aaattgactcttatatccagtttctagttgtctgacttgaaaaattcttagg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 592
Length of database: 992
Length adjustment: 10
Effective length of query: 582
Effective length of database: 982
Effective search space: 571524
Effective search space used: 571524
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
