Query= MSMg01no139_o06.b1 MSMg01no139_o06.b1 CHROMAT_FILE:
MSMg01no139_o06.b1 PHD_FILE: MSMg01no139_o06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:26 2005
(538 letters)
>mm_chr4_137319287_137320224
Length = 938
Score = 1002 bits (518), Expect = 0.0
Identities = 527/532 (99%), Gaps = 5/532 (0%)
Strand = Plus / Minus
Query: 5 ggaattcccacatgtac-cacaacattttgagtttaagtgagctaagcatatagggtcaa 63
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ggaattcccacatgtacacacaacattttgagtttaagtgagctaagcatatagggtcaa 505
Query: 64 agcgtaaacaaacaaacaaacaaacaaacaatatttctttacagtagcattaaaaaaacc 123
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agcgt----aaacaaacaaacaaacaaacaatatttctttacagtagcattaaaaaaacc 449
Query: 124 aaggcatgtatggtaaccacacacacacacacatgagagaaaagcatatgtataagtgtc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 aaggcatgtatggtaaccacacacacacacacatgagagaaaagcatatgtataagtgtc 389
Query: 184 acaaaacctgtctaagttctgtctgccgatcagtcaaaggaccaggagagtcagcactgt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 acaaaacctgtctaagttctgtctgccgatcagtcaaaggaccaggagagtcagcactgt 329
Query: 244 acagacaacgactcttcctactaatcaatggctctttttatggggcttggtttttctgag 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acagacaacgactcttcctactaatcaatggctctttttatggggcttggtttttctgag 269
Query: 304 acaaggccctggaacttactctgtagaccaggctagcctcaaattaggagatccatcttt 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 acaaggccctggaacttactctgtagaccaggctagcctcaaattaggagatccatcttt 209
Query: 364 ttctgcctcccaagtgcttaaacgtgtgcgctaccccaccccaccccgctaactttcttt 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 ttctgcctcccaagtgcttaaacgtgtgcgctaccccaccccaccccgctaactttcttt 149
Query: 424 atatatattaagattttattttatgtatatgagtgctttgtctgcacatatttctgtgca 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 148 atatatattaagattttattttatgtatatgagtgctttgtctgcacatatttctgtgca 89
Query: 484 ccacatgttcgtttgatgtccttagagttgcagatggttgtgaactgccgtg 535
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 88 ccacatgttcgtttgatgtccttagagttgcagatggttgtgaactgccgtg 37
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 49
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 538
Length of database: 938
Length adjustment: 10
Effective length of query: 528
Effective length of database: 928
Effective search space: 489984
Effective search space used: 489984
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no139_o06.g1 MSMg01no139_o06.g1 CHROMAT_FILE:
MSMg01no139_o06.g1 PHD_FILE: MSMg01no139_o06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:26 2005
(444 letters)
>mm_chr4_137186505_137187348
Length = 844
Score = 859 bits (444), Expect = 0.0
Identities = 444/444 (100%)
Strand = Plus / Plus
Query: 1 ttacagatagttgtgagatgctttgtgagtggtggaaactgaacctgggtcatttgcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttacagatagttgtgagatgctttgtgagtggtggaaactgaacctgggtcatttgcaag 260
Query: 61 agcaacaagggctcttatccactgaactagctctagccccattgaatcattcttatcttt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agcaacaagggctcttatccactgaactagctctagccccattgaatcattcttatcttt 320
Query: 121 tttaaaaaaatttatgtacttatttcatatatatgggtacactgtagctgttttcagaca 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaaaaaaatttatgtacttatttcatatatatgggtacactgtagctgttttcagaca 380
Query: 181 caccagaagagggcatcagatcccattacagatggttgggagccaccatgtggttgctgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caccagaagagggcatcagatcccattacagatggttgggagccaccatgtggttgctgg 440
Query: 241 gaattgaactcaggacctctggaagagcagtcagtgctcttaacctctgagccatctctc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gaattgaactcaggacctctggaagagcagtcagtgctcttaacctctgagccatctctc 500
Query: 301 tagcccctggactgtatctccaattttttcttaattttggggtgagggggtgctatccta 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tagcccctggactgtatctccaattttttcttaattttggggtgagggggtgctatccta 560
Query: 361 atgtaaaaacaataattaaggaagtggttctctcctgcctctttacatagttccctggga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgtaaaaacaataattaaggaagtggttctctcctgcctctttacatagttccctggga 620
Query: 421 cttaattttttaaattttttttcc 444
||||||||||||||||||||||||
Sbjct: 621 cttaattttttaaattttttttcc 644
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 444
Length of database: 844
Length adjustment: 10
Effective length of query: 434
Effective length of database: 834
Effective search space: 361956
Effective search space used: 361956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
