AGTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAGTGGTCACCCCGTATGTACAAGGCTCCAAGGTCAATCCTCCCT
CTACAAAAGGTGAAGAAATGCATGAAAGCAAAAAATAAAATGAAATTGTC
TTGGGTAAGCTATCAAAGTCAATGAATAATTCATATTGCGGATTTTTGGG
TGGTCTCATATTTTGTCATAGTCTTTGATGCGAGAGCATATATCCACAAT
ATGTATTATATATCCAAAGAAAGAAAGTTGGAACCAAAGGCTTCTGGGCT
AATATCTACTTATCAGTGAGTGCATATTATGTGTGTTCTTTTGTGATTGG
GTTACCTCACTCAGGATGATATCCTCTAGATACATTCATTTGCCTAAGAC
TTTCATAAATCCATTGTTTTTAAGAGCTACATAGTACTCCATTGTGAAAA
TGAGCCACATATTCTGTATCCACTCTTCTGTTGAGGGTTATCTGGGTTCT
TTCCAGCTTCTGGCTACTATAAATATGGCTACTATGAACATAGTTGGGCA
TGTGTCCTTATTACATGTTGTAGCATCTTCTGGGTATATACCCAGGAGTG
GTACAGCTGGATCATCAGGTAATACTATGTCTAATTTTCTCAGGAACCAC
CAAACTGATTTCCAGAGGGATTGTACCAGCCTTCATTCCCACCAGCAGTA
GAGGAGTGTTCCTCTTCCT

NACGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTACAGAGGAGAGAGGGGGCATATA
GAGTCCCCCTCCTGAAAGAAGGACATCAAATGAGGGTTAGGGTGGCCCAT
AATTGTTCCTGTCTGAATGAACTGCAGGGACAAAAAATGGAGAAGAGCCT
GAGAAAAAGGATATCCAGTGATGGGCCCAAATTGGGATCCAGCTCAAGGA
GAGGCTCCAAGACTATTACTGAGGCTATGGTGTGCTCACAAAAAGGAGCC
TATCATCCTTGCCCTCCGAAATACCCTTCAAGTAGCTGAAAGAGTCAGAT
GCAGATATTTATACCCAACCAATGGACAGAGGCTATGGCTGAATTAGGGA
AAAACTAGAAGCTAAGGCAGAGGGTGGCCCTGTAGAAATACCAGTAGTCT
CAACTAACCTGGATCCTTAACATCTCTCAGCCACCAACCAGGAAGCCTAC
ACCAACTGATATGAGGCCTCAACCCATATACTGCAGAGGACTCAATCTGG
ACTTAGTTAGAGAACAGGAACCTAACCCTCTAAAGACTGGAGGTCCCAGG
GAGTAGGGAGGTCTGGTGGGGTGGCGGGATGGGAAGTTTTTTACTCCCTT
TTCCTTCCTCCTTTTCTCTTTTTTTCTTCTTTCCTCTTCACCCCTTCACC
TTTTTCCCTTTTCC

Query= MSMg01no139_o23.b1 MSMg01no139_o23.b1 CHROMAT_FILE:
MSMg01no139_o23.b1 PHD_FILE: MSMg01no139_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:29 2005
         (673 letters)



>mm_chr4_73137475_73138548
          Length = 1074

 Score =  793 bits (410), Expect = 0.0
 Identities = 434/442 (98%), Gaps = 1/442 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagtggtcaccccgtatgtacaaggctccaaggtcaatcctccctctacaaaagg 64
           ||||||||||||||||  | ||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 442 gaattcagtggtcaccttgcatgtacaaggctccaaggtcaatcctctctctataaaagg 383

                                                                       
Query: 65  tgaagaaatgcatgaaagcaaaaaataaaatgaaattgtcttgggtaagctatcaaagtc 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 tgaagaaatgcatgagagcaaaaaataaaatgaaattgtcttgggtaagctatcaaagtc 323

                                                                       
Query: 125 aatgaataattcatattgcggat-ttttgggtggtctcatattttgtcatagtctttgat 183
           ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct: 322 aatgaataattcatattgcggatattttgggtggtctcatattttgtcatagcctttgat 263

                                                                       
Query: 184 gcgagagcatatatccacaatatgtattatatatccaaagaaagaaagttggaaccaaag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcgagagcatatatccacaatatgtattatatatccaaagaaagaaagttggaaccaaag 203

                                                                       
Query: 244 gcttctgggctaatatctacttatcagtgagtgcatattatgtgtgttcttttgtgattg 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gcttctgggctaatatctacttatcagtgagtgcatattatgtgtgttcttttgtgattg 143

                                                                       
Query: 304 ggttacctcactcaggatgatatcctctagatacattcatttgcctaagactttcataaa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 ggttacctcactcaggatgatatcctctagatacattcatttgcctaagactttcataaa 83

                                                                       
Query: 364 tccattgtttttaagagctacatagtactccattgtgaaaatgagccacatattctgtat 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  tccattgtttttaagagctacatagtactccattgtgaaaatgagccacatattctgtat 23

                                 
Query: 424 ccactcttctgttgagggttat 445
           ||||||||||||||||||||||
Sbjct: 22  ccactcttctgttgagggttat 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 673
Length of database: 1074
Length adjustment: 10
Effective length of query: 663
Effective length of database: 1064
Effective search space:   705432
Effective search space used:   705432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)