BAC Information

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BAC

Clone NameMSMg01-140E13
Chromosome4 (Build37)
Map Location 39,146,698 - 39,147,228
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039448, LOC665520, LOC100039487
Downstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880, LOC384007, Aco1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-140E13.T7 (MSMg01no140_e13.b1)MSMg01-140E13.TJ (MSMg01no140_e13.g1)
ACCAG345465AG345466
length719710
length of high quality
(start - end)
149 (71 - 219)531 (77 - 607)
definitionCHROMAT_FILE: MSMg01no140_e13.b1 PHD_FILE: MSMg01no140_e13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:58 2005CHROMAT_FILE: MSMg01no140_e13.g1 PHD_FILE: MSMg01no140_e13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:57:58 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GGGAATCTATAATTTGCGGCGCTATACGACTCCTATTCCAAGAGGATCCG
CGGAATTCACATGTGTGTCACCATGGCTCCAACCGCATATGTATCAGAAG
ATGGCCTTGTTGGGCATCAACGGGAGAAGAGGCCCTTGGTCCTGTGAAGG
CTCGATGCCTCAGTGTAAGGGAATGCCAGGACATGAAGGTGTGAGTGGGT
GGATGGGTGAGGGGAGGTCTCTCTTTTTTCCTTCTTTCTTTTTCTCTTGC
TTTTTCTTTTTTCCTGTTTTCGTTTCTATCACACTTTTTCCTTTTTTTCC
CCCATTTTTTTTCTCTTTTTTTTTTTTTTCCTTATTCTATCTCCCCCCCT
CTTTTTTTTTTTTTTCTACCCCTCTTTCGCTTTTGATAATCTTTTTCCTT
TTTCTTTTTTCCCTCCCTTTTTTTTTTTTTCCCCTTTTTATTTTTACCTC
TTTTCCTCTTTTCCCTTTTTTCTTTTTCCCCTTTCTTTTCTTTTTTTTTT
CTTTTTTTTTTTTTTTATTCCTTTTTTTCTTCCTCTTTCTTCCTTTTTCA
CTTTTTCTCTTATCCCCTTTTTATTCATTCCTCTTTTTCCTTCCCTTCTT
CTCACCTTTTCTTTTTTTCTCCTCTTTTCCCCTTTTTTCTTCTTTTCTTT
TTTCCCTCTCTTTTTTTCTCCTCTCTTTCTACCTTCCTTTTTTTTTCCCC
CTCCTTCCCCCCTTTTCCN
NNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGTATTGGAAGAAATTGAGAAA
TAAGTGACATCAAAATTTAATCTATTCTTGATGAACTACTGTTGCACAGG
ATAAATTGAGAAGGCTATCTAAGGAAACATTTTCATTGTTTTTGTATTTT
TTGTTTTGTTTTGTTTTTTTTGTTTGTTTGTTTGTTTTAACTTGAAAAGA
ATGAGAAGCCACAGTATGAAAATAAGTATTTCAAGTGATATAGTTCTAGC
CATAGTATACTTGAAGCAGATTATAGAAAATAGGAAAAAATTTCATCTCT
AAGAAATTAGAAAAAACAAATACAAATACAATAGCTCAAAATAGCTATTG
CAAGTTAATAGCAACGACTTTCCCAAAGTTGTTTCCATTAGATTATCTTA
GTCATAGTAAGAACTTACTAGACCCATCCCTTTGACAGTGTCTGAATTTT
CATTCTACCATATAGGTGAGTATTGACTACTTTAATCACATCTGATTTTG
TTGCCCTTTCAGATATGAAGGAGAAGATGGCACATGCCATCTTGAAGCAT
TTGTATGTTATTCTATTCTCATGACAGTTTTCATTCAGTACCACAGTCAC
TAGCAGTTACCCATTTTTACCGAGTCTTGCACAATGACTAACCTTTCCTA
AAAAAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no140_e13.g1 MSMg01no140_e13.g1 CHROMAT_FILE:
MSMg01no140_e13.g1 PHD_FILE: MSMg01no140_e13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:57:58 2005
         (531 letters)



>mm_chr4_39146349_39147279
          Length = 931

 Score =  982 bits (508), Expect = 0.0
 Identities = 526/532 (98%), Gaps = 2/532 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgtattggaagaaattgagaaataagtgacatcaaaatttaatctattcttgatgaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880 tgtgtattggaagaaattgagaaataagtgacatcaaaatttaatctattcttgatgaac 821

                                                                       
Query: 61  tactgttgcacaggataaattgagaaggctatctaaggaaacattttcattgtttttgta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820 tactgttgcacaggataaattgagaaggctatctaaggaaacattttcattgtttttgta 761

                                                                       
Query: 121 ttttttgttttgttttgtttt-ttttgtttgtttgtttgttttaacttgaaaagaatgag 179
           ||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct: 760 ttttttgttttgttttgttttgttttg-ttgtttgtttgttttaacttgaaaagaatgag 702

                                                                       
Query: 180 aagccacagtatgaaaataagtatttcaagtgatatagttctagccatagtatacttgaa 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 701 aagccacagtatgaaaataagtatttcaagtgatatagttctagccatagtatacttgaa 642

                                                                       
Query: 240 gcagattatagaaaataggaaaaaatttcatctctaagaaattagaaaaaacaaatacaa 299
           |||||  | ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 641 gcagaaaagagaaaataggaaaaaatttcatctctaaggaattagaaaaaacaaatacaa 582

                                                                       
Query: 300 atacaatagctcaaaatagctattgcaagttaatagcaacgactttcccaaagttgtttc 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 atacaatagctcaaaatagctattgcaagttaatagcaacgactttcccaaagttgtttc 522

                                                                       
Query: 360 cattagattatcttagtcatagtaagaacttactagacccatccctttgacagtgtctga 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 cattagattatcttagtcatagtaagaacttactagacccatccctttgacagtgtctga 462

                                                                       
Query: 420 attttcattctaccatataggtgagtattgactactttaatcacatctgattttgttgcc 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 attttcattctaccatataggtgagtattgactactttaatcacatctgattttgttgcc 402

                                                               
Query: 480 ctttcagatatgaaggagaagatggcacatgccatcttgaagcatttgtatg 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 ctttcagatatgaaggagaagatggcacatgccatcttgaagcatttgtatg 350


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 531
Length of database: 931
Length adjustment: 10
Effective length of query: 521
Effective length of database: 921
Effective search space:   479841
Effective search space used:   479841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)