NNAATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAAATGCGCG
GAATTCTTTGTTCATTCCTCGAGACCCATTTTTTAATGGGGTTATTTGAT
ATTCTGAAGTCCACCTTCTTGAGTTCTTTATATATGTTGGATATTTGTCC
CCTATCTGATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTC
TTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTC
ATTAGGTCCCATTTGTCAATTCTCGATCTTACAGCACAAGCCATTGCTGT
TCTGTTCAGGAATTTTTCCCCTGTGCCCATATCTTCAAGGCTTTTCCCCA
CTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTG
ATCCACTTAGATTTTACCTTAGTACAAGGAGATAAGTATGGATCGATTCG
CATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCAATTGTTGAAAA
TGCTGTCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAG
TGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTG
GCCTACTTGTCTGTCTCTATACCAGTACCATGCATTTTTTATCATAATTG
CTCTGCAGCAAAGCTTTACGCCTGGCATGGTGATTCCGCTTGAAGTTCTC
TTATCCCTGAGAAG

NNCCGATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTGACTTTGCTGATGAAAAGGTTTG
GCCTGAAGAGATGGAATATTCCTGTGGAACTCCCAAATCATAAAAGAGAG
CCTCTAAAGTCATTGCCACAGTAATTCCCAGTCTGGGCCTGCTCTACCCT
TTAGCAGTGAGAAACATTGATGGCTTAACTAGAGTCAGCATCTTCCTGAC
GGCCCACCAGCAGCAGTACTGTTGTATTTCCACTTCCCTCACTGGAGCCC
CATCCCTGGGAACTGCGTTTACAATATGGAAGCTGTGAAGACAATAAGTT
TACATGGAAATTAATAAAAGAAACTAAGGCCATAATCAATAAGTGTTTTC
TTGACGCTTTTATTCACAGAATTCAAAATGCCTGGGTGTACAGCACTACT
GGCATCAAATTCCACGTATAGGAAATTATAATCAAATTTACAAAGAGAGG
AGTTAAATACGGCCATTGGAGGGAAGAAGGGAAAGTAGGAAGGCAAGAAG
TCAGATGTGACTATAAAGAGATTTCTTTGCTGAAGGAAGATTCTCAAAGA
TCTTGATCAAAATGTGTCAGTCACCACATATGAAGGAGAGGCGTATACCA
GAAGGATCTATGTCTGCTCTGCTAAGTCCAGACAGCTGAATCTCAAGGCA
TGTGCCAAGGACAGTAN

Query= MSMg01no140_o23.g1 MSMg01no140_o23.g1 CHROMAT_FILE:
MSMg01no140_o23.g1 PHD_FILE: MSMg01no140_o23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:58:49 2005
         (604 letters)



>mm_chr4_12455290_12456293
          Length = 1004

 Score = 1129 bits (584), Expect = 0.0
 Identities = 599/604 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgactttgctgatgaaaaggtttggcctgaagagatggaatattcctgtggaactccca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 ttgactttgctgatgaaaaggtttggcctgaagagatggaatattcctgtggaactccca 745

                                                                       
Query: 61  aatcataaaagagagcctctaaagtcattgccacagtaattcccagtctgggcctgctct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 aatcataaaagagagcctctaaagtcattgccacagtaattcccagtctgggcctgctct 685

                                                                       
Query: 121 accctttagcagtgagaaacattgatggcttaactagagtcagcatcttcctgacggccc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 684 accctttagcagtgagaaacattgatggcttaactagagtcagcatcttcctgaaggccc 625

                                                                       
Query: 181 accagcagcagtactgttgtatttccacttccctcactggagccccatccctgggaactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 accagcagcagtactgttgtatttccacttccctcactggagccccatccctgggaactg 565

                                                                       
Query: 241 cgtttacaatatggaagctgtgaagacaataagtttacatggaaattaataaaagaaact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 cgtttacaatatggaagctgtgaagacaataagtttacatggaaattaataaaagaaact 505

                                                                       
Query: 301 aaggccataatcaataagtgttttcttgacgcttttattcacagaattcaaaatgcctgg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 aaggccataatcaataagtgttttcttgacgcttttattcacagaattcaaaatgcctgg 445

                                                                       
Query: 361 gtgtacagcactactggcatcaaattccacgtataggaaattataatcaaatttacaaag 420
            |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 atgtaaagcattactggcatcaaattccacgtataggaaattataatcaaatttacaaag 385

                                                                       
Query: 421 agaggagttaaatacggccattggagggaagaagggaaagtaggaaggcaagaagtcaga 480
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agaggagttaaatatggccattggagggaagaagggaaagtaggaaggcaagaagtcaga 325

                                                                       
Query: 481 tgtgactataaagagatttctttgctgaaggaagattctcaaagatcttgatcaaaatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtgactataaagagatttctttgctgaaggaagattctcaaagatcttgatcaaaatgt 265

                                                                       
Query: 541 gtcagtcaccacatatgaaggagaggcgtataccagaaggatctatgtctgctctgctaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gtcagtcaccacatatgaaggagaggcgtataccagaaggatctatgtctgctctgctaa 205

               
Query: 601 gtcc 604
           ||||
Sbjct: 204 gtcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 604
Length of database: 1004
Length adjustment: 10
Effective length of query: 594
Effective length of database: 994
Effective search space:   590436
Effective search space used:   590436
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)