BAC Information

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BAC

Clone NameMSMg01-141D14
Chromosome4 (Build37)
Map Location 41,204,922 - 41,205,457
singlet/doubletsinglet
Overlap geneUbap2
Upstream geneTopors, Ndufb6, 4930509K18Rik, A930001M12Rik, Aptx, LOC665630, LOC622208, Dnaja1, Smu1, LOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2
Downstream geneWdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1, Ccl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611, LOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141D14.T7 (MSMg01no141_d14.b1)MSMg01-141D14.TJ (MSMg01no141_d14.g1)
ACCAG346155AG346156
length1,1671,232
length of high quality
(start - end)		---564 (142 - 705)
definitionCHROMAT_FILE: MSMg01no141_d14.b1 PHD_FILE: MSMg01no141_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:23 2005CHROMAT_FILE: MSMg01no141_d14.g1 PHD_FILE: MSMg01no141_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:23 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTGNNGGNNAACATGGGCGCTAAGACTACTAAGGGAGAGGATCCGCGGA
ATTCCCAGNGNTTCNTGGGCCATCAGGGCCGCCNNANGNNGNNNGNGNNG
ANNAGNNNCCCATAAAAGGGGNGANNNGGNNNNNNNGNNNGGANGNGNNN
NGNGNGGGNNGGGAAAANGGGGNNNNNNNNNGGCGGANNNNNNNNNNNGG
NNGAGNNGNNGNNNGNNNNGANANGNNANANGNNANANNANGNGAANNNN
AGNNGNNNNNAANNNNNNNNNNNNNANNNNNANNGANGNAAANNAANNNN
NNNAAGNAANNAAGNGGGGGNNNNGGGAGTTTGNNNAANAGGAAGAGNGN
NGGNNAGGGNAGAANGAAANAGNGAANNNAANNNNGGAAANNNANNNGAT
TTTTTTTTTNNAANNNNANANGNNNANAGNAGNGNANGAGAAAAAAAGGA
NANNATTANNAANNNNNNNNNNNANNNNNNNANNNNNNAAAAAAAAAAGA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAA
AAGAAAGAGGAGAGAGAAAAAGAAAAAAAAAAAAAAGGGAAGAAAGGAAA
AAAGAAAAGAAAAAAGAGAAGGNNNAANNAAGGAANNNAGGAAGGANGGG
AANGAAANAGGAAGNNNNAAANNAAAAAAAAAGAGAGAANAANNGGNNNN
GGNNNNNAAAGGGNNGGAANNNGAAATATTTTTTTTTAAANAAAAAAGGG
AAAAATAATANTAAATNTTTAGGAATGGGTTAGAATGGTTAATTAAGAAA
AGGAATTATATGTGTAAANATAGAAGGNAAGAAAANAAATGGAAAAAAAG
GAAAGATTGGAATAAAAAAAAGGAGGGGATATGANTAAAAAGAGGGGGGA
AAAAAGGGGGGAAAAAAGAGAGGGATATTTTTNTTTTATTTTAGAAAAGA
AAAAAATAAGAAGGTTTAAGGAAAATAAAAAAAATATATANANTTTGAAG
AAAAGAAGGAAAAATGGGGAAATGGGAATAAATAAAGTGTTAAAAAAAAA
AAAGGTNAAAAAAAAAAAAATGNTAAAATAATGGGGAGGTGAAGGAAATT
AAAAAAAAAGTGAAAAA

CCGTCCTTTNTNNTAACATGGCAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTTTAAAAGCTGCTAGGTTAGAG
AGGGTTTAAAGGCTGGCCTATGTGGCTCAGTGGTATACCAATGGTTGCCT
AGCATATCTGATGTCCTGGATTTGATCCCTAGCACCATGAAAGACTGGAG
CAATAAAATAATAATAATTAAAAACTGAGGTTCAAGCCGGGCGTGGTAGC
ACACGCCTTTAATCCCAGCACTCAGGAGGCAGAGGCAGGCAGATTTCTGA
GTTCGAGGAGTGAGTTTCAGGACAGCCAGGGCTACACAGAGAAACCCTGT
CTCGAAAAACCAAAAAAAAAAAAAACCAAAAAAAAAAAAACCCCAAAAAC
CTGAGGTTCAAATTTGAGAAAGCTGCGTAGGAGTGGGACGTATGTATGGA
AGAAGCCACAGGCATGCCATGCTTCTCCTGCTCTGCCCTTTGGTAGCTGG
AGAGAATGTGGGCTGTACCAAGGAAAATCTGATATCTTCAAATGTTCAAG
AGTTGCCCAGTACCATTCCTTTTCCATGGGCACTCAGCACCGCCCAACTG
ATAATACTGTGTGGGTGTAGGGAGGCCATCCTTGTCCACCAGCTGCTGGG
GGCCTGACCCTGCCCTCTGCAGCTGTGGAGAATAAAAGTATCAGCTTGCT
CAGCTCCTGGCATTCCAGCACTAGCAGTTGAGCCTCATAACTGAGTGTTT
GGCACCCCTCTTGCCTTGTTCTCTCCAGATTGGCAGNGGTGATTTCTTCT
TGCTGTCTGTTGCAAACTTTATAAACCCGTAGAGAGTCTTTTCTAAAAAA
GATTGAGAAGAGTGAATTCTGATTTAAAAGCCAGAATGCCGATTTGAAAT
TTAATTGAAAGTTATTAAAACCCGGCTTGTCCCAGAATAACAAAAATGTA
GGGAGGCCTTGCTGGGTTTTTTGAAAGCCTGTGGAAGGCTTGAAAAAATG
GCTCTAAAGCTTAAAAACTCTGACTCCTCTTCCAAAAGTTCTTAATTCTG
TTTCCAGTCCCCACATTGGGGTCTCTCACCCCCCCGCTAAAGGAATCTGG
TAGCCTTCCTTTTGGAATGTTTTAAACACCCCTTTTATTTATTTTTTGAA
TTTTTTCTTTACATCAGGTGTTTTAAATCATCCTTATGTTATTTAAGTGG
GTTGGAAATATTTAGGTTCTTTCTGTCCGCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_d14.g1 MSMg01no141_d14.g1 CHROMAT_FILE:
MSMg01no141_d14.g1 PHD_FILE: MSMg01no141_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:23 2005
         (564 letters)



>mm_chr4_41204497_41205457
          Length = 961

 Score =  959 bits (496), Expect = 0.0
 Identities = 529/544 (97%), Gaps = 8/544 (1%)
 Strand = Plus / Minus

                                                                       
Query: 21  tgtcctggatttgatccctagcaccatgaaagactggagcaataaaataataataattaa 80
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 tgtcctggatttgatccctagcaccatgaaagactggagcaataaaataataataattaa 902

                                                                       
Query: 81  aaactgaggttcaagccgggcgtggtagcacacgcctttaatcccagcactcaggaggca 140
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 aaactgaggttcaagccgggcgtggtagcacacgcctttaatcccagcactcaggaggca 842

                                                                       
Query: 141 gaggcaggcagatttctgagttcgaggagtgagtttcaggacagccagggctacacagag 200
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841 gaggcaggcggatttctgagttcgaggagtgagtttcaggacagccagggctacacagag 782

                                                                       
Query: 201 aaaccctgtctcgaaaaaccaaaaaaaaaaaaaaccaaaaaaaaaaaaaccccaaaaacc 260
           |||||||||||| ||||||||||||||||       ||||||||||||| ||||||||||
Sbjct: 781 aaaccctgtctcaaaaaaccaaaaaaaaa-------aaaaaaaaaaaaa-cccaaaaacc 730

                                                                       
Query: 261 tgaggttcaaatttgagaaagctgcgtaggagtgggacgtatgtatggaagaagccacag 320
           ||||||||| |  |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 729 tgaggttcagagctgagaacgctgcgtaggagtgggacgtatgtatggaagaagccacag 670

                                                                       
Query: 321 gcatgccatgcttctcctgctctgccctttggtagctggagagaatgtgggctgtaccaa 380
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 669 gcatgccatgcttctcctgctctgccctttggtagctgaagagaatgtgggctgtaccaa 610

                                                                       
Query: 381 ggaaaatctgatatcttcaaatgttcaagagttgcccagtaccattccttttccatgggc 440
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 ggaaaatctgatatcttcaaatgttcaagagttgcccagtaccattccttttccatgggc 550

                                                                       
Query: 441 actcagcaccgcccaactgataatactgtgtgggtgtagggaggccatccttgtccacca 500
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 actcagcaccgcccaactgataatactgtgtgggtgtagggaggccatccttgtccacca 490

                                                                       
Query: 501 gctgctgggggcctgaccctgccctctgcagctgtggagaataaaagtatcagcttgctc 560
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 gctgctgggggcctgaccctgccctctgcagctgtggagaataaaagtatcagcttgctc 430

               
Query: 561 agct 564
           ||||
Sbjct: 429 agct 426


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 564
Length of database: 961
Length adjustment: 10
Effective length of query: 554
Effective length of database: 951
Effective search space:   526854
Effective search space used:   526854
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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