BAC Information

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BAC

Clone NameMSMg01-141H12
Chromosome4 (Build37)
Map Location 106,543,221 - 106,698,873
singlet/doubletdoublet
Overlap geneSsbp3
Upstream geneMap1lc3, LOC384039, Usp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11
Downstream geneMrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920, Tmem48, Glis1, Dmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141H12.T7 (MSMg01no141_h12.b1)MSMg01-141H12.TJ (MSMg01no141_h12.g1)
ACCAG346333AG346334
length1,3431,305
length of high quality
(start - end)		316 (141 - 456)527 (137 - 663)
definitionCHROMAT_FILE: MSMg01no141_h12.b1 PHD_FILE: MSMg01no141_h12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:54 2005CHROMAT_FILE: MSMg01no141_h12.g1 PHD_FILE: MSMg01no141_h12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 18:59:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,698,558 - 106,698,873)(106,543,221 - 106,543,746)
sequence
CCCCTCCCTTNTTAACATGCGGCGCTAXXXXXXXXXXXXXXXXXXXXXXX
CGCGGAATTCACTACCTACAGAGTTGGCANAACAAGCCCCCTGNATCCTG
CTAATGCGTGATAAGATCCCCTTAAAAAATCCAAACCCCACAACAAAAAC
AAAAATAAAGAAAAACAGAGAATCAGAGTGCCTTATGTCACAAGCAAGCA
TCTCTCCAGAACTCCAGTGTGCAGGAGAAAGTCCGTGAGTGTGCGCATGC
CACACAAACATGCATGTATGCAGATTAGAAGTTGTAAAAGTTTACTACAG
TGGCTCCCAGCAGTTTGCCTTTGAGGCCCCTTTTGGCCCAACAGGCCACC
AAGACCTGGACTCAGGATAGGGGCAAGTGTCACAGACTACAATGCACCCT
TCTTCTCCATGGTTTTTGTCCCTTAGNATAGAAACTCCAGACATTTGCAA
AGGTAAGGAAAGCAAGTAGCTACAGCCACTGGTTCCACCCATCCTTAGTC
TTCTTTCTAAAAGTCCATGTGAACAAAGAGCCAGGGGCTGGGAGAAGGTA
GGGCTGGGGGTAAGGTAGAGACCACAAAGAGGTGGGCAAAACAAGAGGCA
AGGGCTGTCCAGCAGCTGAGGGCACCACCGGGGACAGCCCCAGAACTTCT
TGGCTAAGTGAGGGGCTGCTCACTTCCGGAAAGCTTGGAGGAGCAGATGT
TCCCCTACCTGCCATGCTACTAAATTCAAAAGTGTGTGTCTTTCTAGCGG
CTGCCAGCAACGGCATGCTTTGTTACCCAGAGCCACTTTCTTATTTAACA
GACATTAAATTACCCCTTTAGCCAATTCTGCCAGCCATTTGTTTTAGCGG
CCTTTCCTAAACATGAAAAACCACCTGCGCATAATGGACTCTGATTAAAA
GGGGCCCCCTAAATTCAACACTCCAGGGTAATGAAAAATTTGTAACTCCC
TTAAAATTAAAACATGGCAGTCGAAAGTTTATTGCAACGCGGGTTAATTA
TTGGTCCCCGCGCTACCTCTTTTTTACCCCCATAACACTTGGGACGTGAA
CGGTAACCCACTATCAACAATATACTGTCCAGCTCACCCCCCTCAATAAA
AATATGGAAAACGTGTACCACAGCATATCCTTACTCCCTCCTCCTTAGGG
TCCCATCATCGTCACAGAGCCCATATAAGCTGTGTACTGTCTTGCCCTCC
CAAGACGTCCTCGTACCTCTCTGGATCACCTTCTCTCCCTTCCNATATAG
GCCCGAGGTCCTCTCGTCTCTTGTACTTCCGCCTGAGCAGTCNNTCTATG
TCACACACGTCCTTACTTACCTCCGCTCTCGTCGACCTCACAT

CTCCTTTTTTTTAACCAGGGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTTAAGTTGTCTGTAACTAAGGC
TTGAGCCTCTGTGGGCCCTGACTGGGGTCCTGACCCCAATCCCTCATGGA
CACCAAAGGGACCACTGTCCTTAACATAGATAAGGAGGGCTAAGAATGCC
TACAGGAAGTGGCGAGGTCCCCGAGGCAGAGGGCATCCCTACCTCTACAG
TTCTGACTGGGTGAAATGTTTATCATAGAACCAGATAAGCACTGGAGCCT
GGAAGTGGGTGAGGCTACAGGAGTGGGTGGGGCTACAGAAGTGGGTGGGG
CTACAGAAGTGGGGCACCTATCAGAGCTTTGACCCAGGAGAGGAGGGATG
AGTGACAATTTCTCTCTCCTGCTGGAGCCTCCTGATAGTTGAACCAGAGA
CCAGGTTTCCTAGGTTCATGGAAATCAGCCTTCCAGGACATGGATTTGAC
AAACAATGATAGGGAACAGGCTTGGGGGAGGGGGATGAAATTGAGACCAT
TCAGCCCAGAGGTAGGCAGTGTACCTGTTCTCTCAAAGTCCACGGAAATA
GAGAAAAATGATCGTTCAAATGATGTGTTTTAGGTTCTAGGAGCATAGAA
GGAGTGAGCAAAGGGCTTGGGAAGAACTCACAGGAAAGGAGCTGGCACCT
TTCAGAGGAGTGTGAAAGAGGTCCAGTGAGATGGCTCATAGATAAAGGTG
CTTGCTGCCAAGTCTGATGATCTGAATTTAATCCCCTAAAAACCACATGG
TGGAGAAAGAGAATGTACTCCTGCATGTTGTTCCTTGCCCTTTATAATTA
CTCTGCTGCATGTGTGGTTTTTTTTTGTTGCTCTCCTCTCAATCTCTTAT
TCTTATCTTTTCTTTTTCTTCTATTCTTTTCCTTCTTTTTCTTCCTCTTT
CTCTTTCTATTTTTCTTTACTTTTTCATTTTCCTTCATCTCTTATTTTCT
TTTTTTTTTCTTTATCTTTTTCTTTCTTTTTCTCTTTTCTTTTCTTCTAT
TTTTCTTGTCCCTACTTTTGCTATCTCTTCTATGACTTATTCCTCTTTTT
ACTTTTTTATATCACTATTCTGTTCACTTCTTTATCTATTCTTCTTTCTT
TCTATTTAATTTACTTTTCTGTCTTTCTCATTCCTTCTTATATACATTCT
CTAACTTTCTTCCTTCTTTTTCTTTTATACTATTTTATTATCTTCTCATA
TTCTCGTCGTATATTACTATTTATTACATCTACATTTTCTTCTCTGTATC
TATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_h12.b1 MSMg01no141_h12.b1 CHROMAT_FILE:
MSMg01no141_h12.b1 PHD_FILE: MSMg01no141_h12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:54 2005
         (316 letters)



>mm_chr4_106698358_106699073
          Length = 716

 Score =  574 bits (297), Expect = e-168
 Identities = 311/320 (97%), Gaps = 8/320 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacaaaaacaaaaataaagaaaaacagagaatcagagtgccttatgtcacaagcaagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 caacaaaaacaaaaataaagaaaaacagagaatcagagtgccttatgtcacaagcaagca 457

                                                                       
Query: 61  tctctccagaactccagtgtgcaggagaaagtccgtgagtgtgcgcatgccacacaaaca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tctctccagaactccagtgtgcaggagaaagtccgtgagtgtgcgcatgccacacaaaca 397

                                                                       
Query: 121 tgcatgtatgcagattagaagttgtaaaagtttactacagtggctcccagcagtttgcct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 tgcatgtatgcagattagaagttgtaaaagtttactacagtggctcccagcagtttgcct 337

                                                                       
Query: 181 ttgaggccccttttggcccaacaggccaccaagacctggactcaggataggggcaagtgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 ttgaggccccttttggcccaacaggccaccaagacctggactcaggataggggcaagtgt 277

                                                                       
Query: 241 cacagactacaatgcacccttcttctccatgg----tttttgtcccttagnatagaaact 296
           ||||||||||||||||||||||||||||||||        |||||||||| |||||||||
Sbjct: 276 cacagactacaatgcacccttcttctccatgggagc----tgtcccttagtatagaaact 221

                               
Query: 297 ccagacatttgcaaaggtaa 316
           ||||||||||||||||||||
Sbjct: 220 ccagacatttgcaaaggtaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no141_h12.g1 MSMg01no141_h12.g1 CHROMAT_FILE:
MSMg01no141_h12.g1 PHD_FILE: MSMg01no141_h12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:54 2005
         (527 letters)



>mm_chr4_106543021_106543946
          Length = 926

 Score =  982 bits (508), Expect = 0.0
 Identities = 523/528 (99%), Gaps = 3/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caatccctcatggacaccaaagggaccactgtccttaacatagataaggagggctaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caatccctcatggacaccaaagggaccactgtccttaacatagataaggagggctaagaa 260

                                                                       
Query: 61  tgcctacaggaagtggcgaggtccccgaggcagagggcatccctacctctacagttctga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcctacaggaagtggcgaggtccccgaggcagagggcatccctacctctacagttctga 320

                                                                       
Query: 121 ctgggtgaaatgtttatcatagaaccagataagcactggagcctggaagtgggtgaggct 180
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgggtgaaatgattatcatagaaccagataagcactggagcctggaagtgggtgaggct 380

                                                                       
Query: 181 acaggagtgggtggggctacagaagtgggtggggctacagaagtggggcacctatcagag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaggagtgggtggggctacagaagtgggtggggctacagaagtggggcacctatcagag 440

                                                                       
Query: 241 ctttgacccaggagaggagggatgagtgacaatttc-tctctcctgctggagcctcctga 299
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 441 ctttgacccaggagaggagggatgagtgaca-tttcctctctcctgctggagcctcctga 499

                                                                       
Query: 300 tagttgaaccagagaccaggtttcctaggttcatggaaatcagccttccaggacatggat 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 tagttgaaccagagaccaggtttcctaggttcatggaaatcagccttccaggacatggat 559

                                                                       
Query: 360 ttgacaaacaatgatagggaacaggcttgggggagggggatgaaattgagaccattcagc 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ttgacaaacaatgatagggaacaggcttgggggagggggatgaaattgagaccattcagc 619

                                                                       
Query: 420 ccagaggtaggcagtgtacctgttctctcaaagtccacggaaatagagaaaaatgatcgt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ccagaggtaggcagtgtacctgttctctcaaagtccacggaaatagagaaaaatgatcgt 679

                                                           
Query: 480 tcaaatgatgtgttttaggttctaggagcatagaaggagtgagcaaag 527
           ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct: 680 tcaaatgatgtgttt-aggttctaggagcatagaacgagtgagcaaag 726


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 527
Length of database: 926
Length adjustment: 10
Effective length of query: 517
Effective length of database: 916
Effective search space:   473572
Effective search space used:   473572
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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