Query= MSMg01no141_h15.b1 MSMg01no141_h15.b1 CHROMAT_FILE:
MSMg01no141_h15.b1 PHD_FILE: MSMg01no141_h15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:55 2005
(622 letters)
>mm_chr4_89129697_89130718
Length = 1022
Score = 1164 bits (602), Expect = 0.0
Identities = 617/622 (99%)
Strand = Plus / Plus
Query: 1 atgtaatttgtttgtatgtaaccttgtgtgccctctctttgtcaagcaggacgcagggct 60
|||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct: 201 atgtaatttgtttgtatgtaaccttgtgtgtgctctctttgtcaagcaggaggcagggct 260
Query: 61 gacacagcgacctcctcatgtggaatcacccggaaccatttctgttccagctcttctgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacacagcgacctcctcatgtggaatcacccggaaccatttctgttccagctcttctgtt 320
Query: 121 ttttggcaattgcatgtgagtttctggatggcttatactgattttagatcaagcatgaga 180
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttttggcaagtgcatgtgagtttctggatgacttatactgattttagatcaagcatgaga 380
Query: 181 ctcagaatagttactgggtgacataaaatgacagaaacacctttgtactgagcggaactt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctcagaatagttactgggtgacataaaatgacagaaacacctttgtactgagcggaactt 440
Query: 241 ctgtgttggtgaaatgataaatataaatgcaaacgaaaactaacatttattgtgtattta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctgtgttggtgaaatgataaatataaatgcaaacgaaaactaacatttattgtgtattta 500
Query: 301 ttctctgtcatcattgtattgagttgcttttctttttcttttctttttttttgttggaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctctgtcatcattgtattgagttgcttttctttttcttttctttttttttgttggaca 560
Query: 361 cccccattctatcctatcttttaggagagttctaaagtctcaatctactgatggggaagt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cccccattctatcctatcttttaggagagttctaaagtctcaatctactgatggggaagt 620
Query: 421 catggatgtctagtggggttggttatcctgtttcaggttagtaagaaacgagctgtgatt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 catggatgtctagtggggttggttatcctgtttcaggttagtaagaaacgagctgtgatt 680
Query: 481 ggagcacaggattagtgtctgcagaagcaaggctcttaaacaaagagacctgctgctgtt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggagcacaggattagtgtctgcagaagcaaggctcttaaacaaagagacctgctgctgtt 740
Query: 541 cacagcttcagggccaacctggagtgctgactgtgacagcaaaactgtagtgcttgaggt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacagcttcagggccaacctggagtgctgactgtgacagcaaaactgtagtgcttgaggt 800
Query: 601 ggggactcccgtggacaaggcg 622
||||||||||||||||||||||
Sbjct: 801 ggggactcccgtggacaaggcg 822
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 622
Length of database: 1022
Length adjustment: 10
Effective length of query: 612
Effective length of database: 1012
Effective search space: 619344
Effective search space used: 619344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no141_h15.g1 MSMg01no141_h15.g1 CHROMAT_FILE:
MSMg01no141_h15.g1 PHD_FILE: MSMg01no141_h15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 18:59:55 2005
(731 letters)
>mm_chr4_89295977_89297105
Length = 1129
Score = 756 bits (391), Expect = 0.0
Identities = 449/477 (94%), Gaps = 19/477 (3%)
Strand = Plus / Minus
Query: 4 tttcagggcagtgataactgtgtgacctatgacttgttc----tctttcccccaaaagaa 59
||||||||||||||||||||||||| || ||||||||| ||||| |||||||
Sbjct: 468 tttcagggcagtgataactgtgtgatgtaggacttgttctatttcttt----taaaagaa 413
Query: 60 taaaactaatatttcatttttttcctttatttaaaaaacaataaaactgtgtgtatggaa 119
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 412 taaaactaatatttcattttttt-ctttatttaaaaaacaataaaactgtgtgtatggaa 354
Query: 120 gtcagtagcttagccaagatcaccagtgtcactggaaagctacacctcaactgcactctt 179
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gtcagaagcttagccaagatcaccagtgtcactggaaagctacacctcaactgcactctt 294
Query: 180 cctcccctgcctcccaatatgcagtgcctacttcaactgccaaattccctttctaacaga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cctcccctgcctcccaatatgcagtgcctacttcaactgccaaattccctttctaacaga 234
Query: 240 aaatcagaagtacttgtcaggttttttaaaaaaatttttt---ataaaaatatgatgaaa 296
|||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 233 aaatcagaagtacttgtcaggttttt----aaaatttttttttataaaaatatgatgaaa 178
Query: 297 tcacttccccctcccttcctacttctatcccctctcagttgccctctctgcaacccttct 356
||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct: 177 tcacttctccctcccttcctacatctagcccctctcagttgccctctctgcaacccttct 118
Query: 357 cgtacccccaactctcaagttgataggctcttttttattatatttgctatgtgcatgtgt 416
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 cgtacccccaactttcaagttgataggctcttttttattatatttgctatgtgcatgtgt 58
Query: 417 gagctcatgcacacaaatatatataaatagagcctgctg---gtgcatttttggcta 470
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 57 gagctcatgcacacaaatatatataaatagagcctgctgctggtgcatttttggcta 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 731
Length of database: 1129
Length adjustment: 10
Effective length of query: 721
Effective length of database: 1119
Effective search space: 806799
Effective search space used: 806799
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
