BAC Information

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BAC

Clone NameMSMg01-141I14
Chromosome4 (Build37)
Map Location 116,700,425 - 116,701,015
singlet/doubletsinglet
Overlap geneEif2b3
Upstream geneNsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3
Downstream genePtch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c, Gm1661, Tmem53, 4931406I20Rik, LOC100041093, Prnpip1, Dmap1, LOC433749, Klf17, Ppia-ps4_1138.1, Slc6a9, B4galt2, Atp6v0b, Dph2, Ipo13, Artn, St3gal3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-141I14.T7 (MSMg01no141_i14.b1)MSMg01-141I14.TJ (MSMg01no141_i14.g1)
ACCAG346383AG346384
length1,2501,274
length of high quality
(start - end)
278 (123 - 400)663 (126 - 788)
definitionCHROMAT_FILE: MSMg01no141_i14.b1 PHD_FILE: MSMg01no141_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:03 2005CHROMAT_FILE: MSMg01no141_i14.g1 PHD_FILE: MSMg01no141_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:00:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTTNGGCACTGGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAA
TTCTCTGAATCCTTGAGAGCCCTTTAAAGCCACCTCTCTCTGGNGGGCCA
CAAGGGAATTCCATTCAAGACTCACACTGACACTTCAGTCAACGATTTAC
ATCTTATTTCTTTTTCTTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTTTCTTTTTTTTTTTTTTTTTTTTGAGACAGGGTTTCTCTG
TATAGCCCTGGCTGTCCTGGACCTCACTTTGTAGACCAGGCTGGCCTTGA
ACTCAGAAATCCACCTGCCTCTGCCCCCCGAGTGCTGGGATTAAAGGCGT
GCGCCACCACGCCCGGCTACATCTTATTTCTATTTAAGCACATCTGATTT
TTTTTTTCAAATAGATTTTAGGGAGACTAATTCCTTACCCCGAAGCCCCG
TGTTTGTTCCACAGAGCTGATTATCCATGCGAATCGTGGTCGGGCCTTGT
GCTTCCTCCTATCACAGTGAACTCTGGAGTCTTTTCAAGTCTTGATACAT
TTAGATGGGAACCCTTTGTGAATAGTCGAAAGTGAATGTTCTGTTTACGC
ATGGCTTCCATATAATTTATTCATGCTCTTTTATGCTAGTTACAGTATTC
CCATGTTATTTTATCATTTCTAATTAAACTAAGCTCACATTTATATATGA
TCTGTTTTTCTTCTCTATTTTAAAAATGCCTTTATGTTGTAATTATTTTT
TTTTATTTCTTATATATATATATCATTGCCTATTCTTTTTTGTTAACGAA
ATACTTTGTATTACTTGATTATTTTTTATTTTTTTTTTTCTTTTATTAAT
ATTATATACTTTTTTTTCTATTTTTTTTTTTTTCTATACCTTTTCCACTC
TTTTTTTATATTTTTTTTTTCTTTTTTTTTATATTATATTTTTTTTTCTT
TTTTATTTTTTTTTTTTTCATTATAATTTTTTATTATTTTCATATTTTCT
TTGTTTATATTTTTTTTTTCTTCTTCTTATTTTTTTTTTTCTTTTTTTTT
TTACATTTTTTTTTTATTTTTTTTTTTCTTATTTTTTCTTTCTATTTTTA
CTACTTTCCTTATTCTTTCTATCTTCTTCTTTATCCCTCTTTTTTCTTCA
TTCTCTTCTACTTATTCTATTATATCTATTTTCTTTTCTTATTTTCCATA
TTATTAATTATAATCTTATTCTTTATTATCATTTATTATTAATACATATC

NCCCGTCTTTTTTTTAACATGGAGCCTGGGGCGCCXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCCTAAAAGAGAGCCTTTTGGACA
TCTTTGGTTGTAACCACCTTGAATTCTACAGGATGCCCGAGATAATCGAC
AAATGCAGAAATTCATTCACTGAGACAATTTCCATCTCCCCGTCAGACGG
GCTCTGCTGTAGGCCACACGCCTGTAACCCAGCCCCCAAAGGGGGACAGA
GGATCAGGGACAAGGCCATCCTTGTCTACACACAAGTTCAAAGCCAGCGT
ATAGAATCACAAATGATAAATGCTAATATGACTGAGCCTTTTCTTTTCTT
TTTAAATAAAAACCTGGCAGTGGGCAACAGTAAATTTCATTTTCAGATCC
TCTGAGCATTTTTTGACCCAGTCGTACTTGCCCAGGACTGGCACCACCTC
ATAGCTGGGGAACTTTAAATGTACCAGACGGGGAAGAAAGAAAATGACTC
CTGGGCTGGCAAGATGGCTCAGTGGTTAAGAGCGCCGACTGCTCTTCCAA
AGGTCCCGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCCA
TAATGAAATCTGATGCCCTCTTCTGGAGTATCTGAGGACAGCTACAGTGT
ACTCACATATAATAAATAAATTTAATTAATTAATTTAAAAAAAAAGAAAA
AGAAAATGACTCCTAAAAGCCTAACCAGTTGGGTTGCAGTCCATCTGTCG
CATCTCTTCAGGCTTCTGTTCCCCTTTTTCCTTTTCTGTGTAGAACAAGA
GAGAACCAAATCTTACCCCGAGTTACCGGAAAACCATAAAGGTGTGGTCT
TGAGAGGGTAAGGCCCTGAACATTTGATTGCTCCTCTTACTCCCACATCC
AAGGTCTGGTTTTCTCAAAAAAATAATTATTATATTTCCCATATAATCCA
ATTATAAATACCCCTTTATGCAGCGGTTGCTTTATTGCTTATAGTTATTA
TAAAATAAATGTGTATGGTTTCCTAATTCTTTTTTTCTCTTGCGGGTTTA
TTGTCAATCTTTTTTTTTTATTCCCCCTATGTTAATAAATTTGTCTCCTT
TATAATCAATCCTTTTTATTTTTTTTTTTTTTATTTTTTTAAATTTTTAC
TTCAGTCTTATTTTACTTTTTATATACTCTACTTATTTCCGAATAAAACT
TCTCTTCTTTTCACTATTTCTTTTCTTAACTTGTATTCTTATATTTATAT
TTCTTTCTATTAATATTTTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no141_i14.g1 MSMg01no141_i14.g1 CHROMAT_FILE:
MSMg01no141_i14.g1 PHD_FILE: MSMg01no141_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:00:03 2005
         (663 letters)



>mm_chr4_116700268_116701328
          Length = 1061

 Score = 1019 bits (527), Expect = 0.0
 Identities = 575/597 (96%), Gaps = 13/597 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctacaggatgcccgagataatcgacaaatgcagaaattcattcactgagacaatttccat 60
           ||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 ctacaggatgaaagagataatcgacaaatgcagaaattcattcactgagacaatttccat 689

                                                                       
Query: 61  ctccccgtcagacgggctctgctgtaggccacacgcctgtaacccagcccccaaaggggg 120
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 688 ctccccgtcagacgggctctgctgtgggccacacgcctgtaacccagcccccaaaggggg 629

                                                                       
Query: 121 acagaggatcagggacaaggccatccttgtctacacacaagttcaaagccagcgtataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 acagaggatcagggacaaggccatccttgtctacacacaagttcaaagccagcgtataga 569

                                                                       
Query: 181 atcacaaatgataaatgctaatatgactgagccttttcttttctttttaaataaaaacct 240
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 568 atcacaaatgataaatgctaatatgactgagcc--ttcttttctttttaaataaaaacct 511

                                                                       
Query: 241 ggcagtgggcaacagtaaatttcattttcagatcctctgagcattttttgacccagtcgt 300
           ||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 510 ggcagtgggcaacagtaaatttcattttcagatcctctgagcattctgtgacccagtcgt 451

                                                                       
Query: 301 acttgcccaggactggcaccacctcatagctggggaactttaaatgtaccagacggggaa 360
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 acttgtccaggactggcaccacctcatagctggggaactttaaatgtaccagacggggaa 391

                                                                       
Query: 361 gaaagaaaatgactcctgggctggcaagatggctcagtggttaagagcgccgactgctct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaaagaaaatgactcctgggctggcaagatggctcagtggttaagagcgccgactgctct 331

                                                                       
Query: 421 tccaaaggtcccgagttcaaatcccagcaaccacatggtggctcacaaccatccataatg 480
           ||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 330 tccaaaggtcctgagttcaaatcccagcaaccacatggtggctcacaaccatccgtaatg 271

                                                                       
Query: 481 aaatctgatgccctcttctggagtatctgaggacagctacagtgtactcacatataataa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 270 aaatctgatgccctcttctggagtatctgaggacagctacagtgtactcacatataataa 211

                                                                    
Query: 541 ataaatttaattaattaatttaaaa-------aaaaagaaaaagaaaatgactccta 590
           ||||| ||||||||||||   ||||       |||||||||||||||||||||||||
Sbjct: 210 ataaa-ttaattaattaa---aaaaaaaaaagaaaaagaaaaagaaaatgactccta 158


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1061
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1051
Effective search space:   686303
Effective search space used:   686303
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)