Query= MSMg01no142_h01.b1 MSMg01no142_h01.b1 CHROMAT_FILE:
MSMg01no142_h01.b1 PHD_FILE: MSMg01no142_h01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:06 2005
(694 letters)
>mm_chr4_39313136_39314229
Length = 1094
Score = 1110 bits (574), Expect = 0.0
Identities = 661/700 (94%), Gaps = 24/700 (3%)
Strand = Plus / Plus
Query: 1 cctgatgcaagaa-accaactcccccccccctaaaaaaaaaaaaaaaaa--caaatgtga 57
|||||| ||| || ||||||||||||||||| |||||||||| |||||||||
Sbjct: 206 cctgattcaa-aacaccaactcccccccccc-------caaaaaaaaaacccaaatgtga 257
Query: 58 attcaagagattcaattaccaagagcacaatgttttaataaagaaagtgacacttatggt 117
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 258 attcaagagattcaattaccaaaagcacaatgttttaataaagaaagtgacacttatagt 317
Query: 118 cctggaattatgagaaggtactgtctttgttatttatgtatttatgcattttattgtttg 177
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct: 318 cctggaattatgagaaggtactgtctttgttttttatgtatttatgcat----ttgtttg 373
Query: 178 tttgtttattcttttcccattattaatttatttattcactttacatccgattgaagcacc 237
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tttgtttattcttttttcattattaatttatttattcactttacatccgattgaagcacc 433
Query: 238 ccttccctccactccagtcattctcaccctcacaaactcatccccccactttccctcccc 297
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 434 ccttccctccactccagtcattctcaccctcacaaactcatccccccattttccctcccc 493
Query: 298 ttctcctcagagaagtggaaacctccttgggtatcaatccacctagggacatcaagttgc 357
||||||||||||| || || ||||||||||||||||||| ||||||||||||||||
Sbjct: 494 ttctcctcagaga-----aaccccccttgggtatcaatccacccagggacatcaagttgc 548
Query: 358 agcagagctaggcatgtattccccacctgaggcccaacaaggcagttcagataggggaag 417
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 549 agcagagctaggcatgtattccccacctgagacccaacaaggcagttcagataggggaag 608
Query: 418 gggatccaagaacaagcaacagagtcagagacagcccctcctccaactgtttggggaccc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 gggatccaagaacaagcaacagagtcagagacagcccctcctccaactgtttggggaccc 668
Query: 478 acatggagacaattctacacttctgctgcatacatgtagggtcactaggtccagcccatg 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 acatggagacaattctacacttctgctgcatacatgtagggtcactaggtccagcccatg 728
Query: 538 tatgctatttggttggtggtgcagtctctgtgagccgttatgagcccaaaataattgact 597
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 729 tatgctatttggttggtggtgcagtctctgtgagccattatgagcccaaaataattgact 788
Query: 598 ctgtagatctccttctagtatgcttgacccctctgtctccctcaatccttctccccactc 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 789 ctgtagatctccttctagtatgcttgacccctctgtctccctcaatccttctccccactc 848
Query: 658 ttccataagacttctga-atg--ccacctgtaatatatct 694
||||||||||||| | | ||| |||| ||||||||||||
Sbjct: 849 ttccataagacttat-atatgtgccacatgtaatatatct 887
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 694
Length of database: 1094
Length adjustment: 10
Effective length of query: 684
Effective length of database: 1084
Effective search space: 741456
Effective search space used: 741456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_h01.g1 MSMg01no142_h01.g1 CHROMAT_FILE:
MSMg01no142_h01.g1 PHD_FILE: MSMg01no142_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:02:07 2005
(733 letters)
>mm_chr4_39466520_39467652
Length = 1133
Score = 1363 bits (705), Expect = 0.0
Identities = 726/733 (99%)
Strand = Plus / Minus
Query: 1 aaaattggagaataagtagcaggatttcaggaggaagagtttgtagcaatcgacattgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 933 aaaattggagaataagtagcaggatttcaggaggaagagtttgtagcaatcgacattgtg 874
Query: 61 atttttcacaaagcacacatatcctcccacaggatgctaaacattcttccaatctatgtg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 873 atttttcacaaagcacacatatcctcccacaggatgctaaacattcttccaatctatgtg 814
Query: 121 aatcatgcagtgggtatccagcagagacaaaccccttagactcaggacttgttagagcat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 813 aatcatgcagtgggtatccagcagagacaaaccccttagactcaggacttgttagagcat 754
Query: 181 gtgcagctattcggagaactttttccccattaagatagaaaaagtatatacagccagtgt 240
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 753 gtgcagctattctgagaactttttccccattaagatagaaaaagtatatacagccagtgt 694
Query: 241 gtatggagactcaggtggcctttagggatctgagagactcaaagatgtcaaggcactata 300
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 693 gtatggagactcaggtggcctttagggatctgagagactcaaagatgttaaggcactata 634
Query: 301 taaaatttaaagctatacaacacaacttgacatctgtacactctgacttctgtcaaggcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 taaaatttaaagctatacaacacaacttgacatctgtacactctgacttctgtcaaggcc 574
Query: 361 tcctaaaggaatcataaatgttcttccttttgtttttccctaatcggcatttgaacaaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 573 tcctaaaggaatcataaatgttcttccttttgtttttccctaatcggcatttgaacaaca 514
Query: 421 ttctgttagcatctaaagtgagacagacttccttctgcttcactgccttcatcccagtgt 480
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 ttctgttagcatctaaaatgagacagacttccttctgcttcactgccttcatcccagtgt 454
Query: 481 aacatagggatgttaggcattttcatgtttttaaatacatgaaacattcatatatgctaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 aacatagggatgttaggcattttcatgtttttaaatacatgaaacattcatatatgctaa 394
Query: 541 ttttcttgccaaatctcacaaaactattgtattaaaaatgagagaaagtgtttataaaaa 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 393 ttttcttgccaaatctcacaaaactattgtattcaaaatgagagaaagtgtttataaaaa 334
Query: 601 cgtgtgattgcttatttcttcaacaagaatggtctgagaaaagtgaggcaattcttacca 660
||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 333 ggtgtgattgcttatttcttcaacaagaatggtctgagaaaagtgaggtaatttttacca 274
Query: 661 cattaaaggaaacttgtctcattgtctctgcagagtaattcttccagtacagcagcagtc 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 cattaaaggaaacttgtctcattgtctctgcagagtaattcttccagtacagcagcagtc 214
Query: 721 aactgagcaacag 733
|||||||||||||
Sbjct: 213 aactgagcaacag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 733
Length of database: 1133
Length adjustment: 10
Effective length of query: 723
Effective length of database: 1123
Effective search space: 811929
Effective search space used: 811929
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
|
