Query= MSMg01no142_n09.b1 MSMg01no142_n09.b1 CHROMAT_FILE:
MSMg01no142_n09.b1 PHD_FILE: MSMg01no142_n09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:01 2005
(635 letters)
>mm_chr4_93958995_93960029
Length = 1035
Score = 1185 bits (613), Expect = 0.0
Identities = 629/635 (99%), Gaps = 2/635 (0%)
Strand = Plus / Plus
Query: 1 aaaaaaatgggattataaaattatagtttcatgaatgttataaagagaaaagctccaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaatgggattataaaattatagtttcatgaatgttataaagagaaaagctccaaag 260
Query: 61 ggggaaaaatgttacaagtccctttgcgttttgccatgcatggggagggaggtgtcagca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggggaaaaatgttacaagtccctttgcgttttgccatgcatggggagggaggtgtcagca 320
Query: 121 aatccccataactgaggctttactctgaagcctatggagtctctgggagaaggagaaaac 180
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 321 aatccccataactgaggctttactctgaagcctatggag--tctgggagaaggagaaaac 378
Query: 181 tcaaaaaataaacaatgcacgtgcacacctgtagctttgagaagcatttttcagcctaca 240
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 taaaaaaataaacaatgcacgtgcacacctgtagctttgagaagcatttttcagcctaca 438
Query: 241 aatgagttcatgttcaaataaaatgtctgacccttaaagtttaatgatttcctaacatat 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct: 439 aatgagttcatgttcaaataaaatgtctgacccttaaaggctaatgatttcctaccatat 498
Query: 301 tatagaatgggtcaatttagaatctcagaattttttttaaagacagagagagagagagag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tatagaatgggtcaatttagaatctcagaattttttttaaagacagagagagagagagag 558
Query: 361 agatcttaatggagcctcttactctgactttcaatgtagctatctagcactagtgagctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 agatcttaatggagcctcttactctgactttcaatgtagctatctagcactagtgagctt 618
Query: 421 tgcttttgcttcaatagtagagaaaaggctactgccattttgaagttctgaacaacaaga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 tgcttttgcttcaatagtagagaaaaggctactgccattttgaagttctgaacaacaaga 678
Query: 481 tcccagttgctcatagctggttcttggctgaagtctaatagtgcctgctttggactgctt 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 tcccagttgctcatagctggttcttggctgaagtctaatagtgcctgctttggactgctt 738
Query: 541 caaccttaacattaatgatgctcagtggaaatcagaggagatttctctgatcaatgaact 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 caaccttaacattaatgatgctcagtggaaatcagaggagatttctctgatcaatgaact 798
Query: 601 aaactcggactctgggaccgttgaacatttagcac 635
|||||||||||||||||||||||||||||||||||
Sbjct: 799 aaactcggactctgggaccgttgaacatttagcac 833
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 635
Length of database: 1035
Length adjustment: 10
Effective length of query: 625
Effective length of database: 1025
Effective search space: 640625
Effective search space used: 640625
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no142_n09.g1 MSMg01no142_n09.g1 CHROMAT_FILE:
MSMg01no142_n09.g1 PHD_FILE: MSMg01no142_n09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:01 2005
(634 letters)
>mm_chr4_94061893_94062925
Length = 1033
Score = 1149 bits (594), Expect = 0.0
Identities = 624/634 (98%), Gaps = 1/634 (0%)
Strand = Plus / Minus
Query: 1 tggtactcactgccaacctttaagagaggtttgtcaattttgtccccaccagccatcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 tggtactcactgccaacctttaagagaggtttgtcaattttgtccccaccagccatcaca 774
Query: 61 ctaacaacagctctgttggccaagaaaattacctttttggatcctgaaggcagtttcatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ctaacaacagctctgttggccaagaaaattacctttttggatcctgaaggcagtttcatt 714
Query: 121 tgggtcttcttgctctctgggttgtggaatattattggcaagaggattgagccagcttgt 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 713 tgggtcttcttgctctctgggttgtggaatattattggcaagaggattgagccagc-tgt 655
Query: 181 tcctgtcctcaggcttttcatctagacaatctttgatagtacccatgcatcgtacccata 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 acctgtcctcaggcttttcatctagacaatctttgatagtacccatgcatcgtacccata 595
Query: 241 ggcaaaacactgtggataccaagttgaaccttcttgctgtagtacacgatttccttctga 300
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 594 ggcaaaacactgtggataccaagttgaaccttcttgctgcagtacacgatttccttctga 535
Query: 301 tgtgattcttaaattaatagggatcactaaagtgccatggccagggtcctgaatgatgtc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 tgtgattcttaaattaatagggatcactaaagtgccatggccagggtcctgaatgatgtc 475
Query: 361 tttcctctacactgcccttgataaagcagcgaggttgaacaaagtctactgcacgtatgc 420
|||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||||||
Sbjct: 474 tttcctctacactgcccttggtaaatcagtgaggttgaacaaagtctactgcacgtatgc 415
Query: 421 acagacatataactgacagctttcctccccactcaggtcacacatcccatgacaaaaagg 480
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 414 acagacatataactgacagctttcctccccactcaggtcacacagcccatgacaaaaagg 355
Query: 481 ggaatacattaagttttgaggatagctataatgacagttctgtattcagagaacagagcc 540
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 354 ggaatacattaagttttgaggatagctataatgatagttctgtattcagagaacagagcc 295
Query: 541 acagattctaaggtattcccatatagaatgtgggaatcaaaccacattcactccatagac 600
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 294 acagattctaagctattctcatatagaatgtgggaatcaaaccacattcactccatagac 235
Query: 601 ttgacaccaaggtcctctgttgattttttttttt 634
||||||||||||||||||||||||||||||||||
Sbjct: 234 ttgacaccaaggtcctctgttgattttttttttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1033
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1023
Effective search space: 638352
Effective search space used: 638352
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
