CTTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATTTCTTAACGCTCGTGTTCTATGAAAATCAAACTAAAATTCTTTC
ATGAAGAGAGGGAAAAAAAAGGAAACACCTTTAGCATGCAAGCCAGACCT
GGCTCTGGGGTTCTTGGTGTCTAACCTCATGATGAATTTTCATAACACGA
AGCTCTTTTAGTTGTCCACACTCACAGCATTATCATTTGGTAGAATGCTA
TACTGCCATTGTGATGACTAAGTCTACATTTTTAACTTCACCAAGCCATT
CAGGCAAACATTACAGCTGCCTCCTTTCCCTGCATTATGAGTGACCCTCG
TCCCATCAGTAAAACATGACTATGACAGCAAAGGGCTGCATAGGAGGCTG
AGCTTTGCTGGATCCCGGGCTCAAACTGAAACGCTGGCTCTTCTTCCTGC
CCTCAGGCTGGAGCTGATGCCATCCTCTTCTAATTCTTGGCCCTTGAGAC
TTGATGTAGAACTACACATTGGGTCTCTTGGGTCTCAGCCTCAGGACACT
TTGGGACATCTCAGTCTCTTAACCAAGCAAGTCAATTCCTTACAATCCTT
CCACCCTCCTGTTTTAGATCATCCTGGCTCCACTGAAGACCAGCCAAGAC
TATAGAATATAGATATAGATATAGATATATATAGATGATATAGATATAGA
TATATAGATATAGATATNGN

GATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAG
CACCTGAAAAAATGCTCAACATCCTTAATCATCAGGGAAATGCAAATCAA
AACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAA
ATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTC
CTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGT
CTGGCGGTTCCTCAGAAAACTGGATATAGTACTACCGGAGGATCCAGCAA
TACCTCTCCTGGGCATATATCCAGAAGATGCCCCAACTGGTAAGAAGGAC
ACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTG
GAAGGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGT
ACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATG
AAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGT
AACACATTCACAAAGGAACTCACACAATATGTACTCACTGATAAGTGGAT
ATTAGCCCAAAACCTAAGATACCCAAGATATAAGATACAATTTCCTAAAC
ACATGAAAC

Query= MSMg01no143_f16.b1 MSMg01no143_f16.b1 CHROMAT_FILE:
MSMg01no143_f16.b1 PHD_FILE: MSMg01no143_f16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:03:54 2005
         (670 letters)



>mm_chr4_40588091_40589160
          Length = 1070

 Score = 1067 bits (552), Expect = 0.0
 Identities = 608/636 (95%), Gaps = 16/636 (2%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatttcttaacgctcgtgttctatgaaaatcaaactaaaattctttcatgaaga 63
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatttcttaaagctcgtgttctatgaaaatcaaactaaaattctttcatgaaga 263

                                                                       
Query: 64  gagggaaaaaaaaggaaacacctttagcatgcaagccagacctggctctggggttcttgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagggaaaaaaaaggaaacacctttagcatgcaagccagacctggctctggggttcttgg 323

                                                                       
Query: 124 tgtctaacctcatgatgaattttcataacacgaagctcttttagttgtccacactcacag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgtctaacctcatgatgaattttcataacacgaagctcttttagttgtccacactcacag 383

                                                                       
Query: 184 cattatcatttggtagaatgctatactgccattgtgatgactaagtctacatttttaact 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cattatcatttggtagaatgctatactgccattgtgatgactaagtctacatttttaact 443

                                                                       
Query: 244 tcaccaagccattcaggcaaacattacagctgcctcctttccctgcattatgagtgaccc 303
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 444 tcaccaagccattcaggcaaacactacagctgcctcctttccctgcattatgagtgaccc 503

                                                                       
Query: 304 tcgtcccatcagtaaaacatgactatgacagcaaagggctgcataggaggctgagctttg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 504 tcgtcccatcagtaaaacatgactatgacagcaaagggctgcataggaggcggagctttg 563

                                                                       
Query: 364 ctggatccc---------------gggctcaaactg-aaacgctggctcttcttcctgcc 407
           ||||| |||               ||||||| || | |||||||||||||||| ||||||
Sbjct: 564 ctggacccccccccccccccccccgggctcagaccggaaacgctggctcttctccctgcc 623

                                                                       
Query: 408 ctcaggctggagctgatgccatcctcttctaattcttggcccttgagacttgatgtagaa 467
           |||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 624 ctcaggctggagctgacgccgtcctcttccaattcttggcccttgagacttgatgtagaa 683

                                                                       
Query: 468 ctacacattgggtctcttgggtctcagcctcaggacactttgggacatctcagtctctta 527
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 ctacacattgggtctcttgggtctcagcctcaggacactttgggacatctcagtctctta 743

                                                                       
Query: 528 accaagcaagtcaattccttacaatccttccaccctcctgttttagatcatcctggctcc 587
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 744 accaagcaagtcaattccttacaatccttccaccctcctgttttaggtcatcctggctcc 803

                                               
Query: 588 actgaagaccagccaagactatagaatatagatata 623
           |||||||||||||||||||||||||||||| |||||
Sbjct: 804 actgaagaccagccaagactatagaatatatatata 839


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 670
Length of database: 1070
Length adjustment: 10
Effective length of query: 660
Effective length of database: 1060
Effective search space:   699600
Effective search space used:   699600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)