Query= MSMg01no143_j01.b1 MSMg01no143_j01.b1 CHROMAT_FILE:
MSMg01no143_j01.b1 PHD_FILE: MSMg01no143_j01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:09 2005
(194 letters)
>mm_chr4_132859189_132859783
Length = 595
Score = 346 bits (179), Expect = e-100
Identities = 191/195 (97%), Gaps = 1/195 (0%)
Strand = Plus / Plus
Query: 1 catttacaaagaagatgttacttttatctgccc-gacagggactgtgggtgagagtctca 59
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 201 catttacaaagaagatgttacttttatctgccaagacagggactgtgggtgagagtctca 260
Query: 60 ccaggcaggggacctacctgctctcctcccatgttgactagcagctctgtgccattgggg 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccaggcaggggacctacctgctctcctcccatgttgactagcagctctgtgccattgggg 320
Query: 120 ctgaaggtcacataggtggcaaccagcactctcagacgggtgttatagtcaggtagcttc 179
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 321 ctgaaggtcacataggtggcaaccagcactctcagacggctgttatagtcaggcagcttc 380
Query: 180 accggcaggtgacct 194
|||||||||||||||
Sbjct: 381 accggcaggtgacct 395
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 595
Length adjustment: 8
Effective length of query: 186
Effective length of database: 587
Effective search space: 109182
Effective search space used: 109182
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no143_j01.g1 MSMg01no143_j01.g1 CHROMAT_FILE:
MSMg01no143_j01.g1 PHD_FILE: MSMg01no143_j01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:09 2005
(556 letters)
>mm_chr4_132999032_132999988
Length = 957
Score = 1054 bits (545), Expect = 0.0
Identities = 554/557 (99%), Gaps = 1/557 (0%)
Strand = Plus / Minus
Query: 1 ttcccagaagccccca-agactcttgcttctgtctcattggctagacagtaaccctggac 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 ttcccagaagcccccacagactcttgcttctgtctcattggctagacagtaaccctggac 698
Query: 60 caattgtagtgacatttgactggtcatctgaccctggataggtcgacaggtagtcctctc 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 caattgtagtgacatttgactggtcatctgaccctggataggtcgacaggtagtcctctc 638
Query: 120 acttgaagaaaacagccttgcttcaggaagggatcagggacaagcacctgcccttatagt 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acttgaagaaaacagccttgcttcaggaagggatcagggacaagcacctgcccttatagt 578
Query: 180 atgagaggaaccgaggattagcggcagcctgcctgtcctctgaggtgacagtaagcgggt 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 atgagaggaaccgaggattagcggcagcctgcctgtcctctgaggtgacagtaagcgggt 518
Query: 240 ctcatcctccctaggtctagactttgtaatccggccgtggaatctactcacttgtaccgt 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 ctcatcctccctaggtctagactttgtaatccggccgtggaatctactcacttgtaccgt 458
Query: 300 gcagcgtttcttctctaagaagccatgactcttctccatgaccacaatttccctggaaat 359
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 457 gcagcgtttcttctctaagaagccatgactcttctccatgagcagaatttccctggaaat 398
Query: 360 ttttggatcccaggaagagtaacaactgttcagcacaccgctagacaggacatctctggg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ttttggatcccaggaagagtaacaactgttcagcacaccgctagacaggacatctctggg 338
Query: 420 tcccagggtcatcccaccctcacagagctcactgttccatcaggcatgggggggggctca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcccagggtcatcccaccctcacagagctcactgttccatcaggcatgggggggggctca 278
Query: 480 accccctgcccgtcacctccatagccccaggcctcccagctcttcccagccctgagcttg 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 accccctgcccgtcacctccatagccccaggcctcccagctcttcccagccctgagcttg 218
Query: 540 gccagctcctctgacac 556
|||||||||||||||||
Sbjct: 217 gccagctcctctgacac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space: 517062
Effective search space used: 517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
