Query= MSMg01no143_n18.b1 MSMg01no143_n18.b1 CHROMAT_FILE:
MSMg01no143_n18.b1 PHD_FILE: MSMg01no143_n18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:31 2005
(272 letters)
>mm_chr4_124822111_124822782
Length = 672
Score = 464 bits (240), Expect = e-135
Identities = 261/268 (97%), Gaps = 2/268 (0%)
Strand = Plus / Plus
Query: 6 gaattcatttgcta-ccaccgtgtgagtttttctgcaaaagctgccaaacgaattaggac 64
|||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcatttgcaatcc-ccgtgtgagtttttctgcaaaagctgccaaacgaattaggac 264
Query: 65 catgaaaggcattttaggggagagcgggccaaggccagctcgcctcctagtagcttctgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 catgaaaggcattttaggggagagcgggccaaggccagctcgcctcctagtagcttctgt 324
Query: 125 gaaaaaaaaagggggggggaggtagcggagtcccacttgcagacacggagagtggggctg 184
|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaaaaaaagggggggggggagatagcggagtcccacttgcagacacggagagtggggctg 384
Query: 185 ccagtggcgctgggctctacccacagctcggctggtgcctcccgctgtgaccagagggga 244
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccagtggcgctggggtctacccacagctcggctggtgcctcccgctgtgaccagagggga 444
Query: 245 agttgtgcaactttggttggtccctgaa 272
||||||||||||||||||||||||||||
Sbjct: 445 agttgtgcaactttggttggtccctgaa 472
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 272
Length of database: 672
Length adjustment: 9
Effective length of query: 263
Effective length of database: 663
Effective search space: 174369
Effective search space used: 174369
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no143_n18.g1 MSMg01no143_n18.g1 CHROMAT_FILE:
MSMg01no143_n18.g1 PHD_FILE: MSMg01no143_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:31 2005
(298 letters)
>mm_chr4_124975820_124976517
Length = 698
Score = 514 bits (266), Expect = e-150
Identities = 290/298 (97%)
Strand = Plus / Minus
Query: 1 catttcagcagctattagggatcagcacctgccctgatacttggtggggcacatgagttt 60
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 498 catttcagcagctattagggatcagcacctgccctgatacttggtggggaagatgagttt 439
Query: 61 gagataagatgggccgtttcaatctcggcacatctgtaattgcattaccattaaattgca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 438 gagataagatgggccgtttcaatctcggcacatctgtaattgcattaccattaaattgca 379
Query: 121 ccgttttccaaaggtgagagcccagggcccttgcgctgagagttttctgcgactctagtg 180
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 378 ccattttccaaaggtgagagcccagggcccttgcgctgagagttttctgcgactctagtg 319
Query: 181 ccaagccctgcagtactgtggcagccccgggcagaggggagaggaggcctagcatgattt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 ccaagccctgcagtactgtggcagccccgggcagaggggagaggaggcctagcatgattt 259
Query: 241 ggccgtctttataacccccttatcttcaaggcctcttgttttccattttatttctaag 298
|||| | | ||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 258 ggccaccataataacccccttgtcttcaaggcctcttgttttccattttatttctaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space: 199121
Effective search space used: 199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
