BAC Information

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BAC

Clone NameMSMg01-144A06
Chromosome4 (Build37)
Map Location 82,144,306 - 82,144,670
singlet/doubletsinglet
Overlap geneNfib
Upstream geneLOC100040144, EG668895, LOC100040164, EG545641
Downstream geneZdhhc21, Cer1, Frem1, LOC667985, 1810054D07Rik, Snapc3, Psip1, LOC100040611
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-144A06.T7 (MSMg01no144_a06.b1)MSMg01-144A06.TJ (MSMg01no144_a06.g1)
ACCAG348201AG348202
length745768
length of high quality
(start - end)
369 (46 - 414)209 (73 - 281)
definitionCHROMAT_FILE: MSMg01no144_a06.b1 PHD_FILE: MSMg01no144_a06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:43 2005CHROMAT_FILE: MSMg01no144_a06.g1 PHD_FILE: MSMg01no144_a06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:04:43 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGG
AATTCCACCCATTTACCGAGGCACTTCTTCCTCACGTCCGTGCAATTGCC
TATACTTGGTTCAACCTGCAGGCTCGAAAACGCAAGTACTTTAAAAAGCA
TGAGAAACGAATGTCGAAGGATGAAGAAAGGGCAGTCAAAGACGAGCTGC
TCAGTGAGAAGCCCGAAATCAAGCAGAAGTGGGCATCCAGGCTCCTGGCC
AAACTGCGCAAAGATATCCGCCAGGAGTACCGGGAGGACTTTGTGCTTAC
CGTGACTGGCAAGAAGCACCCGTGCTGTGTCTTATCCAATCCAGACCACA
AGGGTAAGATTAGGAGGATCGACTGCCTACGACAGGCAGACAAAGTCTGG
CGTCTGGATCTAGTCATCCCCCATCCTGTTCAAAGGCATCCCTTTGGAGA
GTACGGATGGAGAGCGACTCATGAAGTCCCCGCACTGCACAAACCCAGCA
CTTTGCGTTCAGCCACACCACATCACAGTATCAGTCAAGGAGCTTGACTT
GTTTTTGTTATACCATTCGCCGGAGCACGGTTTGGATCCCATTGTTCTTT
CTTCTAGCATGGTAAAATACGCCGCCTATTTCTTTTGATACTTTTACCCC
TGTTTTTGTACCGCCACTGTTTTTTACGCCCCTTTTCTCCGCTTTCTTGT
CCCTCTTCCCATTTTCTTCGCGACCCCGTTGCCCTTTTTTTGTTC
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXATTGCGGTGATGGTGAGAACTCAGGAAT
CACCTGCAAATTCAGCAGCAAGCAGAAACTCAAACACCTGATAACAACGC
ATATCTCAGCGGGCATAAGGACACACAGTGCTAATCCTATCACTTAGGAG
GTAGATTTGAGAGTTCAAGTTCACCCTCAGTTACATAGCAAGTCCCAGGA
TAGCCCAGGTTCCTAGAGACCCTATCTCATAATGAAACAAACCCAGGTTT
ACCAACCCACATTTTATATACACTCTCACTCGTATCACCATATACTGACG
GACACGCTAAGCTGCCAATATATTACTAGCGTAAGCATGTACCCTACCTT
ACCCGATTATTGTTGCGCCCCCCCCCTCCTCGTTAGCGCTTACCCACGTT
TTACGCCCCCCCCCATATTATAGCCAGCCCTTATTACCCACATGCCACAT
TTGTACTGCCTCTTTTTCCCCTACTTTCCCTCGTTCCTCGATTTTATTCC
TTTTTCCCTTCTTTCCTTTTTCCCCCCGCTTTTCTTCCCTCTTCCCCCCC
TTTTTCCTTTTCTTTCTCTATCTTCCCCTCTCTCTCCACTTTCCCGTTTC
TTTTCCCCCTTTCTTCCTTTTTTTCCCACTCTTTCCTCTCCTCTTTTTTC
TTCTCCGTCTTCTCTCATACCTCCGGCTTTCGTCTTTGTCTTCCTTTTTT
CCCCTCCCTCTCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no144_a06.b1 MSMg01no144_a06.b1 CHROMAT_FILE:
MSMg01no144_a06.b1 PHD_FILE: MSMg01no144_a06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:04:43 2005
         (369 letters)



>mm_chr4_82144102_82144870
          Length = 769

 Score =  675 bits (349), Expect = 0.0
 Identities = 361/365 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccacccatttaccgaggcacttcttcctcacgtccgtgcaattgcctatacttgg 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 569 gaattccacccatttattgaggcacttcttcctcacgtccgtgcaattgcctatacttgg 510

                                                                       
Query: 65  ttcaacctgcaggctcgaaaacgcaagtactttaaaaagcatgagaaacgaatgtcgaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ttcaacctgcaggctcgaaaacgcaagtactttaaaaagcatgagaaacgaatgtcgaag 450

                                                                       
Query: 125 gatgaagaaagggcagtcaaagacgagctgctcagtgagaagcccgaaatcaagcagaag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 gatgaagaaagggcagtcaaagacgagctgctcagtgagaagcccgaaatcaagcagaag 390

                                                                       
Query: 185 tgggcatccaggctcctggccaaactgcgcaaagatatccgccaggagtaccgggaggac 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 tgggcatccaggctcctggccaaactgcgcaaagatatccgccaggagtaccgggaggac 330

                                                                       
Query: 245 tttgtgcttaccgtgactggcaagaagcacccgtgctgtgtcttatccaatccagaccac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 329 tttgtgcttaccgtgactggcaagaagcacccgtgctgtgtcttatccaatccagaccag 270

                                                                       
Query: 305 aagggtaagattaggaggatcgactgcctacgacaggcagacaaagtctggcgtctggat 364
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 269 aagggtaagattaggaggatcgactgcctgcgacaggcagacaaagtctggcgtctggat 210

                
Query: 365 ctagt 369
           |||||
Sbjct: 209 ctagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)